STRINGSTRING
sync_1404 sync_1404 sync_1403 sync_1403 sync_1397 sync_1397 sync_1329 sync_1329 phnC phnC sync_1289 sync_1289 sync_1288 sync_1288 sync_1273 sync_1273 sync_0977 sync_0977 psbT psbT sync_2918 sync_2918 sync_2888 sync_2888 ndhI ndhI ndhE ndhE ndhD-2 ndhD-2 sync_2588 sync_2588 sync_2515 sync_2515 sync_2395 sync_2395 sync_2258 sync_2258 sync_2196 sync_2196 psaF psaF tatC tatC sync_2138 sync_2138 sync_1958 sync_1958 sync_1942 sync_1942 ndhD ndhD sync_1757 sync_1757 sync_1749 sync_1749 sync_0476 sync_0476 psaD psaD tatA tatA psbI psbI psbK psbK ndhK ndhK psbF psbF psbL psbL psbJ psbJ sync_0197 sync_0197 psbZ psbZ sync_1483 sync_1483 sync_1498 sync_1498 psbW psbW sync_1429 sync_1429 thf1 thf1 sync_1405 sync_1405
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sync_1404ABC transporter component, likely for sugar transport; Identified by match to protein family HMM PF00528. (270 aa)
sync_1403ABC transporter for sugars, membrane component; Identified by match to protein family HMM PF00528. (291 aa)
sync_1397Iron-sulfur cluster-binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (74 aa)
sync_1329Conserved hypothetical protein. (225 aa)
phnCABC-type phosphate/phosphonate transport system permease component. (509 aa)
sync_1289Putative membrane protein, YjgP/YjgQ family protein; Identified by match to protein family HMM PF03739. (392 aa)
sync_1288Possible ABC transporter, ATP binding component; Identified by match to protein family HMM PF00005. (242 aa)
sync_1273ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (213 aa)
sync_0977Putative sn-glycerol-3-phosphate ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (278 aa)
psbTPhotosystem II reaction centre T protein superfamily protein; Seems to play a role in the dimerization of PSII. Belongs to the PsbT family. (31 aa)
sync_2918Lipoprotein, putative; Identified by match to protein family HMM TIGR03042. (152 aa)
sync_2888Nitrate reductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (742 aa)
ndhINADH-plastoquinone oxidoreductase, I subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient; Belongs to the complex I 23 kDa subunit family. (219 aa)
ndhENADH dehydrogenase I chain 4L or K; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. (111 aa)
ndhD-2NADH dehydrogenase I chain 4 (or M); NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family. (558 aa)
sync_2588Possible ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005. (269 aa)
sync_2515K+ transporter, Trk family protein; Identified by match to protein family HMM PF02254. (234 aa)
sync_2395Ferric iron ABC transporter (FeT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (436 aa)
sync_2258S4 domain protein; Identified by match to protein family HMM PF01479. (259 aa)
sync_2196Possible transporter, membrane component; Identified by match to protein family HMM PF02405. (248 aa)
psaFPhotosystem I reaction center subunit III; Identified by match to protein family HMM PF02507. (159 aa)
tatCSec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. (258 aa)
sync_2138Potassium transporter, voltage-gated ion channel (VIC) family protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885. (368 aa)
sync_1958NADH-ubiquinone/plastoquinone oxidoreductase, subunit 4 family protein; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972. (501 aa)
sync_1942ABC transporter, ATP binding component, possibly iron transporter; Identified by match to protein family HMM PF00005. (373 aa)
ndhDNAD(P)H-quinone oxidoreductase NdhD subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972. (523 aa)
sync_1757Iron chelate ABC transporter (FeCT) family, ATP-binding protein; Identified by match to protein family HMM PF00005. (250 aa)
sync_1749ABC transporter, ATP binding domain, possibly Mn transport; Identified by match to protein family HMM PF00005. (263 aa)
sync_0476Cation transporter, voltage-gated ion channel (VIC) family protein; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885. (235 aa)
psaDPhotosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. (143 aa)
tatATwin-arginine translocation protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (92 aa)
psbIPhotosystem II reaction center I protein; One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light- driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (39 aa)
psbKPhotosystem II reaction center protein PsbK; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (47 aa)
ndhKNADH dehydrogenase I chain B or NdhK; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration; Belongs to the complex I 20 kDa subunit family. (259 aa)
psbFCytochrome b559, beta subunit; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. Belongs to the PsbE/PsbF family. (45 aa)
psbLPhotosystem II reaction center protein PsbL; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and/or dimerization. (39 aa)
psbJPhotosystem II reaction center protein PsbJ; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (66 aa)
sync_0197Cation transporter, voltage-gated ion channel (VIC) family protein; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885. (274 aa)
psbZPhotosystem II core protein PsbZ; Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna. (62 aa)
sync_1483Possible ABC transporter component, ATP binding protein; Identified by match to protein family HMM PF00005. (280 aa)
sync_1498Manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005. (259 aa)
psbWPhotosystem II reaction center protein PsbW; Identified by match to protein family HMM PF03912; match to protein family HMM TIGR03047; Belongs to the Psb28 family. (128 aa)
sync_1429Lactose transport system permease protein; Identified by match to protein family HMM PF00528. (299 aa)
thf1Uncharacterized protein; May be involved in photosynthetic membrane biogenesis. (252 aa)
sync_1405ABC transporter for sugars, ATP binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (323 aa)
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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