(9 nodes) Box C/D RNA processing network (Colletotrichum graminicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GLRG_11370	Tat pathway signal sequence. (619 aa)
	GLRG_01260	Fibrillarin. (331 aa)
	GLRG_02400	POPLD domain-containing protein. (941 aa)
	GLRG_03609	Uncharacterized protein. (243 aa)
	GLRG_05166	RNase3 domain-containing protein. (334 aa)
	GLRG_05877	Rpp14/Pop5 family protein. (188 aa)
	GLRG_05945	Uncharacterized protein. (269 aa)
	GLRG_06295	NOSIC domain-containing protein. (621 aa)
	GLRG_07621	Uncharacterized protein. (189 aa)

Your Current Organism:

Colletotrichum graminicola

NCBI taxonomy Id: 645133
Other names: C. graminicola M1.001, Colletotrichum graminicola M1.001, Glomerella graminicola M1.001

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLRG_01260	GLRG_05166	E3Q4V1	E3QGN4	Fibrillarin.	RNase3 domain-containing protein.	0.577
GLRG_01260	GLRG_06295	E3Q4V1	E3QJW3	Fibrillarin.	NOSIC domain-containing protein.	0.999
GLRG_02400	GLRG_03609	E3Q6U2	E3QC77	POPLD domain-containing protein.	Uncharacterized protein.	0.995
GLRG_02400	GLRG_05877	E3Q6U2	E3QIB8	POPLD domain-containing protein.	Rpp14/Pop5 family protein.	0.999
GLRG_02400	GLRG_05945	E3Q6U2	E3QIW3	POPLD domain-containing protein.	Uncharacterized protein.	0.977
GLRG_02400	GLRG_07621	E3Q6U2	E3QP19	POPLD domain-containing protein.	Uncharacterized protein.	0.999
GLRG_03609	GLRG_02400	E3QC77	E3Q6U2	Uncharacterized protein.	POPLD domain-containing protein.	0.995
GLRG_03609	GLRG_05877	E3QC77	E3QIB8	Uncharacterized protein.	Rpp14/Pop5 family protein.	0.995
GLRG_03609	GLRG_05945	E3QC77	E3QIW3	Uncharacterized protein.	Uncharacterized protein.	0.847
GLRG_03609	GLRG_06295	E3QC77	E3QJW3	Uncharacterized protein.	NOSIC domain-containing protein.	0.530
GLRG_03609	GLRG_07621	E3QC77	E3QP19	Uncharacterized protein.	Uncharacterized protein.	0.994
GLRG_05166	GLRG_01260	E3QGN4	E3Q4V1	RNase3 domain-containing protein.	Fibrillarin.	0.577
GLRG_05877	GLRG_02400	E3QIB8	E3Q6U2	Rpp14/Pop5 family protein.	POPLD domain-containing protein.	0.999
GLRG_05877	GLRG_03609	E3QIB8	E3QC77	Rpp14/Pop5 family protein.	Uncharacterized protein.	0.995
GLRG_05877	GLRG_05945	E3QIB8	E3QIW3	Rpp14/Pop5 family protein.	Uncharacterized protein.	0.974
GLRG_05877	GLRG_07621	E3QIB8	E3QP19	Rpp14/Pop5 family protein.	Uncharacterized protein.	0.999
GLRG_05945	GLRG_02400	E3QIW3	E3Q6U2	Uncharacterized protein.	POPLD domain-containing protein.	0.977
GLRG_05945	GLRG_03609	E3QIW3	E3QC77	Uncharacterized protein.	Uncharacterized protein.	0.847
GLRG_05945	GLRG_05877	E3QIW3	E3QIB8	Uncharacterized protein.	Rpp14/Pop5 family protein.	0.974
GLRG_06295	GLRG_01260	E3QJW3	E3Q4V1	NOSIC domain-containing protein.	Fibrillarin.	0.999