(68 nodes) RNA phosphodiester bond hydrolysis, endonucleolytic network (Colletotrichum graminicola)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GLRG_08364	RNase3 domain-containing protein; Belongs to the helicase family. Dicer subfamily. (1532 aa)
	GLRG_08522	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (87 aa)
	GLRG_08955	Uncharacterized protein. (353 aa)
	GLRG_08981	Methyltransferase domain-containing protein. (283 aa)
	GLRG_09012	Pectate lyase. (336 aa)
	GLRG_09157	RNase H domain-containing protein. (213 aa)
	GLRG_09385	tRNA intron endonuclease. (784 aa)
	GLRG_09613	Ribonuclease. (130 aa)
	GLRG_09689	Lactamase_B domain-containing protein. (324 aa)
	GLRG_10001	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (457 aa)
	GLRG_00294	S1 RNA binding domain-containing protein. (1772 aa)
	GLRG_00018	KRI1-like family protein. (698 aa)
	GLRG_00036	RNase H domain-containing protein. (266 aa)
	GLRG_00682	RNA recognition domain-containing protein. (846 aa)
	GLRG_01146	Ribonuclease T2 family protein; Belongs to the RNase T2 family. (301 aa)
	GLRG_01496	18S rRNA biogenesis protein RCL1. (402 aa)
	GLRG_02386	RNAse P Rpr2/Rpp21/SNM1 subunit domain-containing protein. (172 aa)
	GLRG_02400	POPLD domain-containing protein. (941 aa)
	GLRG_02661	Uncharacterized protein. (90 aa)
	GLRG_02152	Metallo-beta-lactamase superfamily protein. (858 aa)
	GLRG_02756	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (324 aa)
	GLRG_02881	Bystin. (489 aa)
	GLRG_02974	RNase P subunit p30. (334 aa)
	GLRG_03150	WD_REPEATS_REGION domain-containing protein. (897 aa)
	GLRG_03177	Uncharacterized protein. (353 aa)
	GLRG_03179	Uncharacterized protein. (395 aa)
	GLRG_03609	Uncharacterized protein. (243 aa)
	GLRG_03658	Endonuclease. (355 aa)
	GLRG_03826	Fcf2 domain-containing protein. (196 aa)
	GLRG_04071	RNase H domain-containing protein. (327 aa)
	GLRG_04133	Guanyl-specific ribonuclease F1. (84 aa)
	GLRG_04433	Uncharacterized protein. (87 aa)
	GLRG_04906	WD domain-containing protein. (892 aa)
	GLRG_04967	WD domain-containing protein. (595 aa)
	GLRG_04973	Uncharacterized protein. (200 aa)
	GLRG_05114	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (344 aa)
	GLRG_05166	RNase3 domain-containing protein. (334 aa)
	GLRG_05206	AARP2CN domain-containing protein. (808 aa)
	GLRG_05207	BING4CT domain-containing protein. (554 aa)
	GLRG_05246	RNase3 domain-containing protein; Belongs to the helicase family. Dicer subfamily. (1447 aa)
	GLRG_05439	Piwi domain-containing protein. (1087 aa)
	GLRG_05445	Uncharacterized protein. (904 aa)
	GLRG_05519	Uncharacterized protein. (272 aa)
	GLRG_11194	Ribonuclease P 40kDa subunit. (361 aa)
	GLRG_10931	RNase H domain-containing protein. (303 aa)
	GLRG_10691	Uncharacterized protein. (1213 aa)
	GLRG_10418	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (193 aa)
	GLRG_10403	CBF/Mak21 family protein. (544 aa)
	GLRG_10392	WD domain-containing protein. (959 aa)
	GLRG_10330	Lariat debranching enzyme domain-containing protein. (574 aa)
	GLRG_10069	RNase III domain-containing protein. (278 aa)
	GLRG_05877	Rpp14/Pop5 family protein. (188 aa)
	GLRG_05689	Ribonuclease P protein subunit. (230 aa)
	GLRG_05945	Uncharacterized protein. (269 aa)
	GLRG_06006	Ribonuclease. (182 aa)
	GLRG_06089	Ribonuclease T2 family protein; Belongs to the RNase T2 family. (323 aa)
	GLRG_06295	NOSIC domain-containing protein. (621 aa)
	GLRG_06683	Piwi domain-containing protein; Belongs to the argonaute family. (968 aa)
	GLRG_07010	Translin family protein. (255 aa)
	GLRG_07234	54S ribosomal protein L3. (428 aa)
	GLRG_07386	Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (355 aa)
	GLRG_07621	Uncharacterized protein. (189 aa)
	GLRG_07833	EST1_DNA_bind domain-containing protein. (406 aa)
	GLRG_08074	F-box domain-containing protein. (425 aa)
	GLRG_08075	Brix domain-containing protein. (308 aa)
	GLRG_08285	tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...] (296 aa)
	GLRG_08315	AARP2CN domain-containing protein. (1148 aa)
	GLRG_08817	Uncharacterized protein. (437 aa)

Your Current Organism:

Colletotrichum graminicola

NCBI taxonomy Id: 645133
Other names: C. graminicola M1.001, Colletotrichum graminicola M1.001, Glomerella graminicola M1.001

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLRG_00018	GLRG_00294	E3Q2P5	E3Q249	KRI1-like family protein.	S1 RNA binding domain-containing protein.	0.739
GLRG_00018	GLRG_00682	E3Q2P5	E3Q3D6	KRI1-like family protein.	RNA recognition domain-containing protein.	0.728
GLRG_00018	GLRG_01496	E3Q2P5	E3Q6A4	KRI1-like family protein.	18S rRNA biogenesis protein RCL1.	0.627
GLRG_00018	GLRG_02386	E3Q2P5	E3Q6S8	KRI1-like family protein.	RNAse P Rpr2/Rpp21/SNM1 subunit domain-containing protein.	0.925
GLRG_00018	GLRG_02400	E3Q2P5	E3Q6U2	KRI1-like family protein.	POPLD domain-containing protein.	0.955
GLRG_00018	GLRG_02756	E3Q2P5	E3Q9S4	KRI1-like family protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.987
GLRG_00018	GLRG_02881	E3Q2P5	E3QA49	KRI1-like family protein.	Bystin.	0.849
GLRG_00018	GLRG_02974	E3Q2P5	E3QAE2	KRI1-like family protein.	RNase P subunit p30.	0.951
GLRG_00018	GLRG_03150	E3Q2P5	E3QAW8	KRI1-like family protein.	WD_REPEATS_REGION domain-containing protein.	0.676
GLRG_00018	GLRG_03826	E3Q2P5	E3QCU4	KRI1-like family protein.	Fcf2 domain-containing protein.	0.748
GLRG_00018	GLRG_04906	E3Q2P5	E3QFS7	KRI1-like family protein.	WD domain-containing protein.	0.648
GLRG_00018	GLRG_04967	E3Q2P5	E3QFY8	KRI1-like family protein.	WD domain-containing protein.	0.648
GLRG_00018	GLRG_04973	E3Q2P5	E3QFZ4	KRI1-like family protein.	Uncharacterized protein.	0.532
GLRG_00018	GLRG_05206	E3Q2P5	E3QGS4	KRI1-like family protein.	AARP2CN domain-containing protein.	0.763
GLRG_00018	GLRG_05207	E3Q2P5	E3QGS5	KRI1-like family protein.	BING4CT domain-containing protein.	0.753
GLRG_00018	GLRG_05445	E3Q2P5	E3QHD9	KRI1-like family protein.	Uncharacterized protein.	0.917
GLRG_00018	GLRG_05689	E3Q2P5	E3QID5	KRI1-like family protein.	Ribonuclease P protein subunit.	0.948
GLRG_00018	GLRG_05877	E3Q2P5	E3QIB8	KRI1-like family protein.	Rpp14/Pop5 family protein.	0.944
GLRG_00018	GLRG_05945	E3Q2P5	E3QIW3	KRI1-like family protein.	Uncharacterized protein.	0.847
GLRG_00018	GLRG_06295	E3Q2P5	E3QJW3	KRI1-like family protein.	NOSIC domain-containing protein.	0.605