34 items (Spizellomyces punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPPG_08636	Uncharacterized protein. (1016 aa)
	SPPG_08714	Uncharacterized protein. (306 aa)
	SPPG_08181	Uncharacterized protein. (118 aa)
	SPPG_07816	Uncharacterized protein. (847 aa)
	SPPG_07674	SET domain-containing protein. (298 aa)
	SPPG_07987	DUF2236 domain-containing protein. (396 aa)
	SPPG_08009	Histone H2A; Belongs to the histone H2A family. (139 aa)
	SPPG_07325	PHD-type domain-containing protein. (790 aa)
	SPPG_06819	SAP domain-containing protein. (655 aa)
	SPPG_06203	Ubiquitin-40S ribosomal protein S27a. (158 aa)
	SPPG_06324	Uncharacterized protein. (831 aa)
	SPPG_05066	Uncharacterized protein. (445 aa)
	SPPG_04443	Uncharacterized protein. (1725 aa)
	SPPG_04849	Uncharacterized protein. (615 aa)
	SPPG_04600	Uncharacterized protein. (983 aa)
	SPPG_04416	B30.2/SPRY domain-containing protein. (1007 aa)
	SPPG_03849	Uncharacterized protein. (865 aa)
	SPPG_03944	WD_REPEATS_REGION domain-containing protein. (428 aa)
	SPPG_03770	Histone-lysine N-methyltransferase, H3 lysine-79 specific. (619 aa)
	SPPG_09147	Uncharacterized protein. (479 aa)
	SPPG_03268	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (127 aa)
	SPPG_09168	Uncharacterized protein. (2073 aa)
	SPPG_02658	Uncharacterized protein. (536 aa)
	SPPG_03589	Uncharacterized protein. (687 aa)
	SPPG_03435	Fe2OG dioxygenase domain-containing protein. (426 aa)
	SPPG_02787	WD_REPEATS_REGION domain-containing protein. (429 aa)
	SPPG_01858	PHD domain-containing protein. (472 aa)
	SPPG_02345	Histone H2B; Belongs to the histone H2B family. (132 aa)
	SPPG_02344	Histone H2A; Belongs to the histone H2A family. (136 aa)
	SPPG_01155	Uncharacterized protein. (322 aa)
	SPPG_01493	WD_REPEATS_REGION domain-containing protein. (570 aa)
	SPPG_01477	WD_REPEATS_REGION domain-containing protein. (343 aa)
	SPPG_00398	Histone domain-containing protein. (150 aa)
	SPPG_00764	Uncharacterized protein. (507 aa)

Your Current Organism:

Spizellomyces punctatus

NCBI taxonomy Id: 645134
Other names: S. punctatus DAOM BR117, Spizellomyces punctatus DAOM BR117

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPPG_00398	SPPG_00764	A0A0L0HUW6	A0A0L0HW21	Histone domain-containing protein.	Uncharacterized protein.	0.666
SPPG_00398	SPPG_01155	A0A0L0HUW6	A0A0L0HRJ1	Histone domain-containing protein.	Uncharacterized protein.	0.779
SPPG_00398	SPPG_01477	A0A0L0HUW6	A0A0L0HT01	Histone domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.797
SPPG_00398	SPPG_01493	A0A0L0HUW6	A0A0L0HSE6	Histone domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.795
SPPG_00398	SPPG_01858	A0A0L0HUW6	A0A0L0HNV6	Histone domain-containing protein.	PHD domain-containing protein.	0.779
SPPG_00398	SPPG_02344	A0A0L0HUW6	A0A0L0HQS1	Histone domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.850
SPPG_00398	SPPG_02345	A0A0L0HUW6	A0A0L0HPG7	Histone domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.936
SPPG_00398	SPPG_02658	A0A0L0HUW6	A0A0L0HL61	Histone domain-containing protein.	Uncharacterized protein.	0.666
SPPG_00398	SPPG_02787	A0A0L0HUW6	A0A0L0HMH6	Histone domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.768
SPPG_00398	SPPG_03268	A0A0L0HUW6	A0A0L0HJ23	Histone domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.878
SPPG_00398	SPPG_03589	A0A0L0HUW6	A0A0L0HL66	Histone domain-containing protein.	Uncharacterized protein.	0.894
SPPG_00398	SPPG_03770	A0A0L0HUW6	A0A0L0HIJ0	Histone domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific.	0.912
SPPG_00398	SPPG_03849	A0A0L0HUW6	A0A0L0HI07	Histone domain-containing protein.	Uncharacterized protein.	0.776
SPPG_00398	SPPG_03944	A0A0L0HUW6	A0A0L0HIF9	Histone domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.912
SPPG_00398	SPPG_04416	A0A0L0HUW6	A0A0L0HGU0	Histone domain-containing protein.	B30.2/SPRY domain-containing protein.	0.900
SPPG_00398	SPPG_04443	A0A0L0HUW6	A0A0L0HF79	Histone domain-containing protein.	Uncharacterized protein.	0.917
SPPG_00398	SPPG_04600	A0A0L0HUW6	A0A0L0HGR9	Histone domain-containing protein.	Uncharacterized protein.	0.791
SPPG_00398	SPPG_04849	A0A0L0HUW6	A0A0L0HGC5	Histone domain-containing protein.	Uncharacterized protein.	0.666
SPPG_00398	SPPG_05066	A0A0L0HUW6	A0A0L0HF70	Histone domain-containing protein.	Uncharacterized protein.	0.776
SPPG_00398	SPPG_06203	A0A0L0HUW6	A0A0L0HC43	Histone domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.773