19 items (Spizellomyces punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPPG_06665	Ubiquitin carboxyl-terminal hydrolase. (944 aa)
	SPPG_06326	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3772 aa)
	SPPG_05258	Uncharacterized protein. (455 aa)
	SPPG_05269	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (453 aa)
	SPPG_05237	WD_REPEATS_REGION domain-containing protein. (658 aa)
	SPPG_04681	SAGA-associated factor 11. (245 aa)
	SPPG_04534	Uncharacterized protein. (1025 aa)
	SPPG_03966	SCA7 domain-containing protein. (604 aa)
	SPPG_03908	SCA7 domain-containing protein. (293 aa)
	SPPG_04307	Uncharacterized protein. (308 aa)
	SUS1	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...] (97 aa)
	SPPG_03286	Bromo domain-containing protein. (994 aa)
	SPPG_03506	Uncharacterized protein. (582 aa)
	SPPG_03637	Ubiquitinyl hydrolase 1. (649 aa)
	SPPG_01802	SWIRM domain-containing protein. (282 aa)
	SPPG_01180	Ubiquitinyl hydrolase 1. (652 aa)
	SPPG_01276	WD_REPEATS_REGION domain-containing protein. (579 aa)
	SPPG_01510	Uncharacterized protein. (514 aa)
	SPPG_00550	SGF29 C-terminal domain-containing protein. (281 aa)

Your Current Organism:

Spizellomyces punctatus

NCBI taxonomy Id: 645134
Other names: S. punctatus DAOM BR117, Spizellomyces punctatus DAOM BR117

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPPG_00550	SPPG_01180	A0A0L0HVC7	A0A0L0HRK7	SGF29 C-terminal domain-containing protein.	Ubiquitinyl hydrolase 1.	0.891
SPPG_00550	SPPG_01276	A0A0L0HVC7	A0A0L0HSD8	SGF29 C-terminal domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.782
SPPG_00550	SPPG_01510	A0A0L0HVC7	A0A0L0HSJ6	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.994
SPPG_00550	SPPG_01802	A0A0L0HVC7	A0A0L0HPJ4	SGF29 C-terminal domain-containing protein.	SWIRM domain-containing protein.	0.931
SPPG_00550	SPPG_03286	A0A0L0HVC7	A0A0L0HKR1	SGF29 C-terminal domain-containing protein.	Bromo domain-containing protein.	0.988
SPPG_00550	SPPG_03506	A0A0L0HVC7	A0A0L0HKT3	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.994
SPPG_00550	SPPG_03637	A0A0L0HVC7	A0A0L0HL48	SGF29 C-terminal domain-containing protein.	Ubiquitinyl hydrolase 1.	0.994
SPPG_00550	SPPG_03908	A0A0L0HVC7	A0A0L0HIA9	SGF29 C-terminal domain-containing protein.	SCA7 domain-containing protein.	0.972
SPPG_00550	SPPG_03966	A0A0L0HVC7	A0A0L0HIA7	SGF29 C-terminal domain-containing protein.	SCA7 domain-containing protein.	0.913
SPPG_00550	SPPG_04307	A0A0L0HVC7	A0A0L0HIE9	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.993
SPPG_00550	SPPG_04534	A0A0L0HVC7	A0A0L0HH39	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.892
SPPG_00550	SPPG_04681	A0A0L0HVC7	A0A0L0HH04	SGF29 C-terminal domain-containing protein.	SAGA-associated factor 11.	0.933
SPPG_00550	SPPG_05237	A0A0L0HVC7	A0A0L0HG03	SGF29 C-terminal domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.888
SPPG_00550	SPPG_05258	A0A0L0HVC7	A0A0L0HEJ7	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.994
SPPG_00550	SPPG_05269	A0A0L0HVC7	A0A0L0HFL5	SGF29 C-terminal domain-containing protein.	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.984
SPPG_00550	SPPG_06326	A0A0L0HVC7	A0A0L0HAR4	SGF29 C-terminal domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.994
SPPG_00550	SPPG_06665	A0A0L0HVC7	A0A0L0HAR1	SGF29 C-terminal domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.891
SPPG_00550	SUS1	A0A0L0HVC7	A0A0L0HJR7	SGF29 C-terminal domain-containing protein.	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]	0.982
SPPG_01180	SPPG_00550	A0A0L0HRK7	A0A0L0HVC7	Ubiquitinyl hydrolase 1.	SGF29 C-terminal domain-containing protein.	0.891
SPPG_01180	SPPG_01276	A0A0L0HRK7	A0A0L0HSD8	Ubiquitinyl hydrolase 1.	WD_REPEATS_REGION domain-containing protein.	0.569