STRINGSTRING
LSM4 LSM4 SPPG_01185 SPPG_01185 SPPG_01080 SPPG_01080 SPPG_01019 SPPG_01019 SPPG_03308 SPPG_03308 SPPG_04117 SPPG_04117 SPPG_03930 SPPG_03930 SPPG_09154 SPPG_09154 SPPG_04261 SPPG_04261 SPPG_09135 SPPG_09135 SPPG_03277 SPPG_03277 SPPG_03166 SPPG_03166 SPPG_03220 SPPG_03220 SPPG_03271 SPPG_03271 SPPG_03535 SPPG_03535 SPPG_03536 SPPG_03536 SPPG_03755 SPPG_03755 LSM5 LSM5 SPPG_04525 SPPG_04525 SPPG_03852 SPPG_03852 SPPG_04616 SPPG_04616 SPPG_04503 SPPG_04503 SPPG_05312 SPPG_05312 SPPG_05679 SPPG_05679 SPPG_04929 SPPG_04929 SPPG_05350 SPPG_05350 SPPG_05377 SPPG_05377 SPPG_05450 SPPG_05450 SPPG_05551 SPPG_05551 SPPG_05695 SPPG_05695 PAN3 PAN3 SPPG_06362 SPPG_06362 SPPG_04185 SPPG_04185 SPPG_03144 SPPG_03144 SPPG_06333 SPPG_06333 SPPG_04059 SPPG_04059 SPPG_06885 SPPG_06885 SPPG_06526 SPPG_06526 SPPG_06784 SPPG_06784 SPPG_07392 SPPG_07392 SPPG_04275 SPPG_04275 SPPG_08666 SPPG_08666 SPPG_08439 SPPG_08439 SPPG_08062 SPPG_08062 SPPG_08182 SPPG_08182 SPPG_07838 SPPG_07838 SPPG_08019 SPPG_08019 SPPG_07182 SPPG_07182 SPPG_07766 SPPG_07766 SPPG_07511 SPPG_07511 SPPG_07308 SPPG_07308 SPPG_07625 SPPG_07625 SPPG_07221 SPPG_07221 SPPG_06998 SPPG_06998 SPPG_06795 SPPG_06795 SPPG_03458 SPPG_03458 SPPG_02565 SPPG_02565 SPPG_02882 SPPG_02882 SPPG_02951 SPPG_02951 SPPG_02739 SPPG_02739 SPPG_02966 SPPG_02966 SPPG_01962 SPPG_01962 SPPG_03001 SPPG_03001 SPPG_01806 SPPG_01806 SPPG_01702 SPPG_01702 SPPG_02161 SPPG_02161 SPPG_08971 SPPG_08971 SPPG_02305 SPPG_02305 SPPG_02248 SPPG_02248 PAN2 PAN2 SPPG_00728 SPPG_00728 SPPG_00510 SPPG_00510 SPPG_00723 SPPG_00723 SPPG_00674 SPPG_00674 LSM1 LSM1 SPPG_00407 SPPG_00407 SPPG_08940 SPPG_08940 SPPG_01506 SPPG_01506 SPPG_01236 SPPG_01236
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (119 aa)
SPPG_01185CULLIN_2 domain-containing protein; Belongs to the cullin family. (849 aa)
SPPG_01080ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family. (545 aa)
SPPG_01019HRDC domain-containing protein. (872 aa)
SPPG_03308Uncharacterized protein. (988 aa)
SPPG_04117Uncharacterized protein. (244 aa)
SPPG_03930Uncharacterized protein. (604 aa)
SPPG_09154Uncharacterized protein. (317 aa)
SPPG_04261Uncharacterized protein. (190 aa)
SPPG_09135AAA_12 domain-containing protein. (406 aa)
SPPG_03277Uncharacterized protein. (520 aa)
SPPG_03166WD_REPEATS_REGION domain-containing protein. (297 aa)
SPPG_03220Uncharacterized protein. (178 aa)
SPPG_03271Uncharacterized protein. (1659 aa)
SPPG_03535Cell differentiation protein rcd1. (341 aa)
SPPG_03536Sm domain-containing protein. (126 aa)
SPPG_03755Uncharacterized protein. (1751 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
SPPG_04525AAA domain-containing protein. (894 aa)
SPPG_03852Uncharacterized protein. (446 aa)
SPPG_04616Mago-bind domain-containing protein. (187 aa)
SPPG_04503Uncharacterized protein. (473 aa)
SPPG_05312Histone H2A; Belongs to the histone H2A family. (136 aa)
SPPG_05679RRM_2 domain-containing protein. (847 aa)
SPPG_04929Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (226 aa)
SPPG_05350Nudix hydrolase domain-containing protein. (398 aa)
SPPG_05377Uncharacterized protein. (527 aa)
SPPG_05450Translation elongation factor EF-1, subunit alpha. (1161 aa)
SPPG_05551Uncharacterized protein. (280 aa)
SPPG_05695Nudix hydrolase domain-containing protein. (1444 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (651 aa)
SPPG_06362Uncharacterized protein. (749 aa)
SPPG_04185Uncharacterized protein. (261 aa)
SPPG_03144Uncharacterized protein. (537 aa)
SPPG_06333Uncharacterized protein. (643 aa)
SPPG_04059Translation elongation factor Tu. (690 aa)
SPPG_06885Uncharacterized protein. (703 aa)
SPPG_06526Endo/exonuclease/phosphatase domain-containing protein. (725 aa)
SPPG_06784Uncharacterized protein. (912 aa)
SPPG_073925'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1092 aa)
SPPG_04275Uncharacterized protein. (260 aa)
SPPG_08666Uncharacterized protein. (1313 aa)
SPPG_08439PINc domain-containing protein. (1122 aa)
SPPG_08062Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3406 aa)
SPPG_08182AAA domain-containing protein. (1069 aa)
SPPG_07838Uncharacterized protein. (2155 aa)
SPPG_08019Endo/exonuclease/phosphatase domain-containing protein. (672 aa)
SPPG_07182PUM-HD domain-containing protein. (503 aa)
SPPG_07766Uncharacterized protein. (799 aa)
SPPG_07511RAI1 domain-containing protein. (428 aa)
SPPG_07308PUM-HD domain-containing protein. (934 aa)
SPPG_07625Uncharacterized protein. (2736 aa)
SPPG_07221Uncharacterized protein. (446 aa)
SPPG_06998Uncharacterized protein. (394 aa)
SPPG_06795Uncharacterized protein. (818 aa)
SPPG_03458S1 motif domain-containing protein. (188 aa)
SPPG_02565Uncharacterized protein. (643 aa)
SPPG_02882Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (409 aa)
SPPG_02951Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family. (190 aa)
SPPG_02739PINc domain-containing protein. (512 aa)
SPPG_02966Uncharacterized protein. (225 aa)
SPPG_01962Uncharacterized protein. (303 aa)
SPPG_03001MIF4G domain-containing protein. (838 aa)
SPPG_01806DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1453 aa)
SPPG_01702Uncharacterized protein. (347 aa)
SPPG_02161Smg4_UPF3 domain-containing protein. (522 aa)
SPPG_08971Uncharacterized protein. (1596 aa)
SPPG_02305Uncharacterized protein. (303 aa)
SPPG_02248SAM domain-containing protein. (523 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1041 aa)
SPPG_00728Uncharacterized protein. (889 aa)
SPPG_00510RPOL4c domain-containing protein. (180 aa)
SPPG_00723Uncharacterized protein. (280 aa)
SPPG_00674Uncharacterized protein. (253 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (136 aa)
SPPG_00407YTH domain-containing protein. (1144 aa)
SPPG_08940Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (248 aa)
SPPG_01506VacB and RNase II family 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (979 aa)
SPPG_01236RNA_bind domain-containing protein. (715 aa)
Your Current Organism:
Spizellomyces punctatus
NCBI taxonomy Id: 645134
Other names: S. punctatus DAOM BR117, Spizellomyces punctatus DAOM BR117
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