9 items (Spizellomyces punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPPG_04185	Uncharacterized protein. (261 aa)
	SPPG_06924	WD_REPEATS_REGION domain-containing protein. (669 aa)
	SPPG_05551	Uncharacterized protein. (280 aa)
	SPPG_04117	Uncharacterized protein. (244 aa)
	SPPG_01019	HRDC domain-containing protein. (872 aa)
	SPPG_02966	Uncharacterized protein. (225 aa)
	SPPG_01962	Uncharacterized protein. (303 aa)
	SPPG_04121	Uncharacterized protein. (258 aa)
	SPPG_02882	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (409 aa)

Your Current Organism:

Spizellomyces punctatus

NCBI taxonomy Id: 645134
Other names: S. punctatus DAOM BR117, Spizellomyces punctatus DAOM BR117

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPPG_01019	SPPG_01962	A0A0L0HRN6	A0A0L0HN85	HRDC domain-containing protein.	Uncharacterized protein.	0.970
SPPG_01019	SPPG_02966	A0A0L0HRN6	A0A0L0HN69	HRDC domain-containing protein.	Uncharacterized protein.	0.458
SPPG_01019	SPPG_04117	A0A0L0HRN6	A0A0L0HJ11	HRDC domain-containing protein.	Uncharacterized protein.	0.458
SPPG_01019	SPPG_04185	A0A0L0HRN6	A0A0L0HJV4	HRDC domain-containing protein.	Uncharacterized protein.	0.458
SPPG_01019	SPPG_05551	A0A0L0HRN6	A0A0L0HDV6	HRDC domain-containing protein.	Uncharacterized protein.	0.458
SPPG_01962	SPPG_01019	A0A0L0HN85	A0A0L0HRN6	Uncharacterized protein.	HRDC domain-containing protein.	0.970
SPPG_01962	SPPG_02966	A0A0L0HN85	A0A0L0HN69	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_01962	SPPG_04117	A0A0L0HN85	A0A0L0HJ11	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_01962	SPPG_04185	A0A0L0HN85	A0A0L0HJV4	Uncharacterized protein.	Uncharacterized protein.	0.998
SPPG_01962	SPPG_05551	A0A0L0HN85	A0A0L0HDV6	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_02966	SPPG_01019	A0A0L0HN69	A0A0L0HRN6	Uncharacterized protein.	HRDC domain-containing protein.	0.458
SPPG_02966	SPPG_01962	A0A0L0HN69	A0A0L0HN85	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_02966	SPPG_04117	A0A0L0HN69	A0A0L0HJ11	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_02966	SPPG_04185	A0A0L0HN69	A0A0L0HJV4	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_02966	SPPG_05551	A0A0L0HN69	A0A0L0HDV6	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_04117	SPPG_01019	A0A0L0HJ11	A0A0L0HRN6	Uncharacterized protein.	HRDC domain-containing protein.	0.458
SPPG_04117	SPPG_01962	A0A0L0HJ11	A0A0L0HN85	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_04117	SPPG_02966	A0A0L0HJ11	A0A0L0HN69	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_04117	SPPG_04185	A0A0L0HJ11	A0A0L0HJV4	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_04117	SPPG_05551	A0A0L0HJ11	A0A0L0HDV6	Uncharacterized protein.	Uncharacterized protein.	0.999