5 items (Spizellomyces punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPPG_02305	Uncharacterized protein. (303 aa)
	SPPG_04503	Uncharacterized protein. (473 aa)
	SPPG_04117	Uncharacterized protein. (244 aa)
	SPPG_04275	Uncharacterized protein. (260 aa)
	SPPG_01019	HRDC domain-containing protein. (872 aa)

Your Current Organism:

Spizellomyces punctatus

NCBI taxonomy Id: 645134
Other names: S. punctatus DAOM BR117, Spizellomyces punctatus DAOM BR117

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPPG_01019	SPPG_02305	A0A0L0HRN6	A0A0L0HQ67	HRDC domain-containing protein.	Uncharacterized protein.	0.476
SPPG_01019	SPPG_04117	A0A0L0HRN6	A0A0L0HJ11	HRDC domain-containing protein.	Uncharacterized protein.	0.458
SPPG_01019	SPPG_04275	A0A0L0HRN6	A0A0L0HJX6	HRDC domain-containing protein.	Uncharacterized protein.	0.458
SPPG_02305	SPPG_01019	A0A0L0HQ67	A0A0L0HRN6	Uncharacterized protein.	HRDC domain-containing protein.	0.476
SPPG_02305	SPPG_04117	A0A0L0HQ67	A0A0L0HJ11	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_02305	SPPG_04275	A0A0L0HQ67	A0A0L0HJX6	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_04117	SPPG_01019	A0A0L0HJ11	A0A0L0HRN6	Uncharacterized protein.	HRDC domain-containing protein.	0.458
SPPG_04117	SPPG_02305	A0A0L0HJ11	A0A0L0HQ67	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_04117	SPPG_04275	A0A0L0HJ11	A0A0L0HJX6	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_04117	SPPG_04503	A0A0L0HJ11	A0A0L0HGK7	Uncharacterized protein.	Uncharacterized protein.	0.443
SPPG_04275	SPPG_01019	A0A0L0HJX6	A0A0L0HRN6	Uncharacterized protein.	HRDC domain-containing protein.	0.458
SPPG_04275	SPPG_02305	A0A0L0HJX6	A0A0L0HQ67	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_04275	SPPG_04117	A0A0L0HJX6	A0A0L0HJ11	Uncharacterized protein.	Uncharacterized protein.	0.999
SPPG_04503	SPPG_04117	A0A0L0HGK7	A0A0L0HJ11	Uncharacterized protein.	Uncharacterized protein.	0.443