10 items (Spizellomyces punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPPG_02248	SAM domain-containing protein. (523 aa)
	SPPG_00017	Uncharacterized protein. (521 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (136 aa)
	SPPG_07182	PUM-HD domain-containing protein. (503 aa)
	SPPG_06795	Uncharacterized protein. (818 aa)
	SPPG_06885	Uncharacterized protein. (703 aa)
	SPPG_03466	Uncharacterized protein. (410 aa)
	SUS1	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...] (97 aa)
	SPPG_01806	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1453 aa)
	SPPG_00674	Uncharacterized protein. (253 aa)

Your Current Organism:

Spizellomyces punctatus

NCBI taxonomy Id: 645134
Other names: S. punctatus DAOM BR117, Spizellomyces punctatus DAOM BR117

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	SPPG_00674	A0A0L0HUE6	A0A0L0HUG1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.858
LSM1	SPPG_06795	A0A0L0HUE6	A0A0L0H8E8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.999
LSM1	SPPG_06885	A0A0L0HUE6	A0A0L0HAG2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Uncharacterized protein.	0.867
SPPG_00674	LSM1	A0A0L0HUG1	A0A0L0HUE6	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.858
SPPG_00674	SPPG_01806	A0A0L0HUG1	A0A0L0HNT5	Uncharacterized protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.738
SPPG_00674	SPPG_03466	A0A0L0HUG1	A0A0L0HJN4	Uncharacterized protein.	Uncharacterized protein.	0.775
SPPG_00674	SPPG_06795	A0A0L0HUG1	A0A0L0H8E8	Uncharacterized protein.	Uncharacterized protein.	0.970
SPPG_00674	SPPG_06885	A0A0L0HUG1	A0A0L0HAG2	Uncharacterized protein.	Uncharacterized protein.	0.977
SPPG_01806	SPPG_00674	A0A0L0HNT5	A0A0L0HUG1	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	Uncharacterized protein.	0.738
SPPG_03466	SPPG_00674	A0A0L0HJN4	A0A0L0HUG1	Uncharacterized protein.	Uncharacterized protein.	0.775
SPPG_03466	SPPG_06885	A0A0L0HJN4	A0A0L0HAG2	Uncharacterized protein.	Uncharacterized protein.	0.924
SPPG_06795	LSM1	A0A0L0H8E8	A0A0L0HUE6	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.999
SPPG_06795	SPPG_00674	A0A0L0H8E8	A0A0L0HUG1	Uncharacterized protein.	Uncharacterized protein.	0.970
SPPG_06795	SPPG_06885	A0A0L0H8E8	A0A0L0HAG2	Uncharacterized protein.	Uncharacterized protein.	0.974
SPPG_06885	LSM1	A0A0L0HAG2	A0A0L0HUE6	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.867
SPPG_06885	SPPG_00674	A0A0L0HAG2	A0A0L0HUG1	Uncharacterized protein.	Uncharacterized protein.	0.977
SPPG_06885	SPPG_03466	A0A0L0HAG2	A0A0L0HJN4	Uncharacterized protein.	Uncharacterized protein.	0.924
SPPG_06885	SPPG_06795	A0A0L0HAG2	A0A0L0H8E8	Uncharacterized protein.	Uncharacterized protein.	0.974