13 items (Spizellomyces punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPPG_00178	Uncharacterized protein. (493 aa)
	SPPG_03613	Polyubiquitin. (243 aa)
	SPPG_01922	Homeobox domain-containing protein. (242 aa)
	SPPG_01636	Ubiquitin-40S ribosomal protein S27a. (158 aa)
	SPPG_06203	Ubiquitin-40S ribosomal protein S27a. (158 aa)
	SPPG_03972	SKIP_SNW domain-containing protein. (419 aa)
	SPPG_05721	Uncharacterized protein. (273 aa)
	SPPG_06227	Polyubiquitin. (381 aa)
	SPPG_07955	CIA30 domain-containing protein. (202 aa)
	SPPG_07706	WD_REPEATS_REGION domain-containing protein. (328 aa)
	SPPG_09556	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (801 aa)
	SPPG_08047	CBFD_NFYB_HMF domain-containing protein. (124 aa)
	SPPG_00254	KxDL domain-containing protein. (144 aa)

Your Current Organism:

Spizellomyces punctatus

NCBI taxonomy Id: 645134
Other names: S. punctatus DAOM BR117, Spizellomyces punctatus DAOM BR117

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPPG_00254	SPPG_01636	A0A0L0HT49	A0A0L0HSX0	KxDL domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.621
SPPG_00254	SPPG_03613	A0A0L0HT49	A0A0L0HL87	KxDL domain-containing protein.	Polyubiquitin.	0.618
SPPG_00254	SPPG_06203	A0A0L0HT49	A0A0L0HC43	KxDL domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.621
SPPG_00254	SPPG_06227	A0A0L0HT49	A0A0L0HAE3	KxDL domain-containing protein.	Polyubiquitin.	0.618
SPPG_00254	SPPG_07955	A0A0L0HT49	A0A0L0H6A8	KxDL domain-containing protein.	CIA30 domain-containing protein.	0.621
SPPG_01636	SPPG_00254	A0A0L0HSX0	A0A0L0HT49	Ubiquitin-40S ribosomal protein S27a.	KxDL domain-containing protein.	0.621
SPPG_01636	SPPG_03613	A0A0L0HSX0	A0A0L0HL87	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin.	0.867
SPPG_01636	SPPG_05721	A0A0L0HSX0	A0A0L0HAY1	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.691
SPPG_01636	SPPG_06227	A0A0L0HSX0	A0A0L0HAE3	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin.	0.865
SPPG_03613	SPPG_00254	A0A0L0HL87	A0A0L0HT49	Polyubiquitin.	KxDL domain-containing protein.	0.618
SPPG_03613	SPPG_01636	A0A0L0HL87	A0A0L0HSX0	Polyubiquitin.	Ubiquitin-40S ribosomal protein S27a.	0.867
SPPG_03613	SPPG_05721	A0A0L0HL87	A0A0L0HAY1	Polyubiquitin.	Uncharacterized protein.	0.734
SPPG_03613	SPPG_06203	A0A0L0HL87	A0A0L0HC43	Polyubiquitin.	Ubiquitin-40S ribosomal protein S27a.	0.867
SPPG_03613	SPPG_07955	A0A0L0HL87	A0A0L0H6A8	Polyubiquitin.	CIA30 domain-containing protein.	0.865
SPPG_05721	SPPG_01636	A0A0L0HAY1	A0A0L0HSX0	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.691
SPPG_05721	SPPG_03613	A0A0L0HAY1	A0A0L0HL87	Uncharacterized protein.	Polyubiquitin.	0.734
SPPG_05721	SPPG_06203	A0A0L0HAY1	A0A0L0HC43	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.691
SPPG_05721	SPPG_06227	A0A0L0HAY1	A0A0L0HAE3	Uncharacterized protein.	Polyubiquitin.	0.734
SPPG_05721	SPPG_07955	A0A0L0HAY1	A0A0L0H6A8	Uncharacterized protein.	CIA30 domain-containing protein.	0.691
SPPG_06203	SPPG_00254	A0A0L0HC43	A0A0L0HT49	Ubiquitin-40S ribosomal protein S27a.	KxDL domain-containing protein.	0.621