5 items (Spizellomyces punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SPPG_01231	Uncharacterized protein. (411 aa)
	SPPG_06801	Uncharacterized protein. (350 aa)
	SPPG_07353	UV excision repair protein Rad23. (388 aa)
	SPPG_00423	Uncharacterized protein. (285 aa)
	SPPG_02051	Uncharacterized protein. (572 aa)

Your Current Organism:

Spizellomyces punctatus

NCBI taxonomy Id: 645134
Other names: S. punctatus DAOM BR117, Spizellomyces punctatus DAOM BR117

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPPG_00423	SPPG_01231	A0A0L0HV18	A0A0L0HSE5	Uncharacterized protein.	Uncharacterized protein.	0.657
SPPG_00423	SPPG_06801	A0A0L0HV18	A0A0L0H9W7	Uncharacterized protein.	Uncharacterized protein.	0.657
SPPG_00423	SPPG_07353	A0A0L0HV18	A0A0L0H7B1	Uncharacterized protein.	UV excision repair protein Rad23.	0.681
SPPG_01231	SPPG_00423	A0A0L0HSE5	A0A0L0HV18	Uncharacterized protein.	Uncharacterized protein.	0.657
SPPG_01231	SPPG_02051	A0A0L0HSE5	A0A0L0HNG7	Uncharacterized protein.	Uncharacterized protein.	0.709
SPPG_01231	SPPG_07353	A0A0L0HSE5	A0A0L0H7B1	Uncharacterized protein.	UV excision repair protein Rad23.	0.807
SPPG_02051	SPPG_01231	A0A0L0HNG7	A0A0L0HSE5	Uncharacterized protein.	Uncharacterized protein.	0.709
SPPG_02051	SPPG_06801	A0A0L0HNG7	A0A0L0H9W7	Uncharacterized protein.	Uncharacterized protein.	0.709
SPPG_02051	SPPG_07353	A0A0L0HNG7	A0A0L0H7B1	Uncharacterized protein.	UV excision repair protein Rad23.	0.703
SPPG_06801	SPPG_00423	A0A0L0H9W7	A0A0L0HV18	Uncharacterized protein.	Uncharacterized protein.	0.657
SPPG_06801	SPPG_02051	A0A0L0H9W7	A0A0L0HNG7	Uncharacterized protein.	Uncharacterized protein.	0.709
SPPG_06801	SPPG_07353	A0A0L0H9W7	A0A0L0H7B1	Uncharacterized protein.	UV excision repair protein Rad23.	0.828
SPPG_07353	SPPG_00423	A0A0L0H7B1	A0A0L0HV18	UV excision repair protein Rad23.	Uncharacterized protein.	0.681
SPPG_07353	SPPG_01231	A0A0L0H7B1	A0A0L0HSE5	UV excision repair protein Rad23.	Uncharacterized protein.	0.807
SPPG_07353	SPPG_02051	A0A0L0H7B1	A0A0L0HNG7	UV excision repair protein Rad23.	Uncharacterized protein.	0.703
SPPG_07353	SPPG_06801	A0A0L0H7B1	A0A0L0H9W7	UV excision repair protein Rad23.	Uncharacterized protein.	0.828