8 items (Lobosporangium transversale) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1Y2GBC1	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (291 aa)
	A0A1Y2GBS3	P-loop containing nucleoside triphosphate hydrolase protein. (327 aa)
	A0A1Y2GIE9	Uncharacterized protein. (1779 aa)
	A0A1Y2GM98	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (366 aa)
	A0A1Y2GWK5	RING-type domain-containing protein. (1049 aa)
	A0A1Y2H0J1	BTB domain-containing protein. (2838 aa)
	A0A1Y2H3N3	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (421 aa)
	A0A1Y2H3V6	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (436 aa)

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2GBC1	A0A1Y2GIE9	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Uncharacterized protein.	0.695
A0A1Y2GBC1	A0A1Y2GWK5	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	RING-type domain-containing protein.	0.695
A0A1Y2GBC1	A0A1Y2H0J1	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	BTB domain-containing protein.	0.695
A0A1Y2GBS3	A0A1Y2GIE9	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.695
A0A1Y2GBS3	A0A1Y2GWK5	P-loop containing nucleoside triphosphate hydrolase protein.	RING-type domain-containing protein.	0.695
A0A1Y2GBS3	A0A1Y2H0J1	P-loop containing nucleoside triphosphate hydrolase protein.	BTB domain-containing protein.	0.695
A0A1Y2GIE9	A0A1Y2GBC1	Uncharacterized protein.	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.695
A0A1Y2GIE9	A0A1Y2GBS3	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.695
A0A1Y2GIE9	A0A1Y2GM98	Uncharacterized protein.	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.695
A0A1Y2GIE9	A0A1Y2H3N3	Uncharacterized protein.	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.695
A0A1Y2GIE9	A0A1Y2H3V6	Uncharacterized protein.	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.695
A0A1Y2GM98	A0A1Y2GIE9	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Uncharacterized protein.	0.695
A0A1Y2GM98	A0A1Y2GWK5	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	RING-type domain-containing protein.	0.695
A0A1Y2GM98	A0A1Y2H0J1	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	BTB domain-containing protein.	0.695
A0A1Y2GWK5	A0A1Y2GBC1	RING-type domain-containing protein.	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.695
A0A1Y2GWK5	A0A1Y2GBS3	RING-type domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.695
A0A1Y2GWK5	A0A1Y2GM98	RING-type domain-containing protein.	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.695
A0A1Y2GWK5	A0A1Y2H3N3	RING-type domain-containing protein.	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.695
A0A1Y2GWK5	A0A1Y2H3V6	RING-type domain-containing protein.	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.695
A0A1Y2H0J1	A0A1Y2GBC1	BTB domain-containing protein.	Septin-domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.695