13 items (Lobosporangium transversale) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1Y2G8K5	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family. (159 aa)
	A0A1Y2G911	WD40-repeat-containing domain protein. (1063 aa)
	A0A1Y2GA26	F-box domain-containing protein. (1242 aa)
	A0A1Y2GEE9	Uncharacterized protein. (719 aa)
	A0A1Y2GEK5	WD40-repeat-containing domain protein. (904 aa)
	A0A1Y2GGD5	Quinon protein alcohol dehydrogenase-like superfamily. (718 aa)
	A0A1Y2GH49	WD40-repeat-containing domain protein. (687 aa)
	A0A1Y2GKR8	Uncharacterized protein. (1194 aa)
	A0A1Y2GM10	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family. (161 aa)
	A0A1Y2GQK0	WD40-repeat-containing domain protein. (387 aa)
	A0A1Y2H210	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family. (159 aa)
	A0A1Y2H425	WD40-repeat-containing domain protein. (383 aa)
	A0A1Y2H7K0	F-box domain-containing protein. (962 aa)

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2G8K5	A0A1Y2G911	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.	WD40-repeat-containing domain protein.	0.905
A0A1Y2G8K5	A0A1Y2GA26	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.	F-box domain-containing protein.	0.877
A0A1Y2G8K5	A0A1Y2GEE9	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.877
A0A1Y2G8K5	A0A1Y2GEK5	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.	WD40-repeat-containing domain protein.	0.890
A0A1Y2G8K5	A0A1Y2GGD5	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.	Quinon protein alcohol dehydrogenase-like superfamily.	0.900
A0A1Y2G8K5	A0A1Y2GH49	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.	WD40-repeat-containing domain protein.	0.900
A0A1Y2G8K5	A0A1Y2GKR8	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.905
A0A1Y2G8K5	A0A1Y2GQK0	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.	WD40-repeat-containing domain protein.	0.890
A0A1Y2G8K5	A0A1Y2H425	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.	WD40-repeat-containing domain protein.	0.890
A0A1Y2G8K5	A0A1Y2H7K0	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.	F-box domain-containing protein.	0.877
A0A1Y2G911	A0A1Y2G8K5	WD40-repeat-containing domain protein.	S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.	0.905
A0A1Y2G911	A0A1Y2GA26	WD40-repeat-containing domain protein.	F-box domain-containing protein.	0.601
A0A1Y2G911	A0A1Y2GEE9	WD40-repeat-containing domain protein.	Uncharacterized protein.	0.601
A0A1Y2G911	A0A1Y2GEK5	WD40-repeat-containing domain protein.	WD40-repeat-containing domain protein.	0.696
A0A1Y2G911	A0A1Y2GGD5	WD40-repeat-containing domain protein.	Quinon protein alcohol dehydrogenase-like superfamily.	0.700
A0A1Y2G911	A0A1Y2GH49	WD40-repeat-containing domain protein.	WD40-repeat-containing domain protein.	0.699
A0A1Y2G911	A0A1Y2GM10	WD40-repeat-containing domain protein.	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	0.905
A0A1Y2G911	A0A1Y2GQK0	WD40-repeat-containing domain protein.	WD40-repeat-containing domain protein.	0.674
A0A1Y2G911	A0A1Y2H210	WD40-repeat-containing domain protein.	E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.	0.905
A0A1Y2G911	A0A1Y2H425	WD40-repeat-containing domain protein.	WD40-repeat-containing domain protein.	0.673