22 items (Lobosporangium transversale) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1Y2GU01	Uncharacterized protein. (226 aa)
	A0A1Y2G6I2	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (173 aa)
	A0A1Y2G916	SH3 domain-containing protein. (1934 aa)
	A0A1Y2GAE2	Uncharacterized protein. (834 aa)
	A0A1Y2GD03	Putative GTP-binding protein rhoA. (197 aa)
	A0A1Y2GD24	Uncharacterized protein. (1574 aa)
	A0A1Y2GDG4	FH2 domain-containing protein. (1803 aa)
	A0A1Y2GEJ1	Uncharacterized protein. (230 aa)
	A0A1Y2GJ34	Lipase_3 domain-containing protein. (657 aa)
	A0A1Y2GLF9	P-loop containing nucleoside triphosphate hydrolase protein. (196 aa)
	A0A1Y2GM03	Uncharacterized protein. (1695 aa)
	A0A1Y2GM49	Uncharacterized protein. (442 aa)
	A0A1Y2GN25	Muskelin N-terminus-domain-containing protein. (690 aa)
	A0A1Y2GNY9	Uncharacterized protein. (1016 aa)
	A0A1Y2GTH7	Uncharacterized protein. (1925 aa)
	A0A1Y2GTW9	P-loop containing nucleoside triphosphate hydrolase protein. (200 aa)
	A0A1Y2GV12	Serine/threonine-protein phosphatase. (307 aa)
	A0A1Y2GW96	Uncharacterized protein. (839 aa)
	A0A1Y2GWZ6	Uncharacterized protein. (480 aa)
	A0A1Y2GXJ0	Protein RHO1. (188 aa)
	A0A1Y2GY93	Uncharacterized protein. (1912 aa)
	A0A1Y2H1P7	Uncharacterized protein. (150 aa)

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2G6I2	A0A1Y2GD03	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	Putative GTP-binding protein rhoA.	0.623
A0A1Y2G6I2	A0A1Y2GLF9	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	P-loop containing nucleoside triphosphate hydrolase protein.	0.623
A0A1Y2G6I2	A0A1Y2GM49	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	Uncharacterized protein.	0.611
A0A1Y2G6I2	A0A1Y2GTW9	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	P-loop containing nucleoside triphosphate hydrolase protein.	0.623
A0A1Y2G6I2	A0A1Y2GU01	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	Uncharacterized protein.	0.611
A0A1Y2G6I2	A0A1Y2GWZ6	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	Uncharacterized protein.	0.611
A0A1Y2G6I2	A0A1Y2GXJ0	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	Protein RHO1.	0.623
A0A1Y2G916	A0A1Y2GEJ1	SH3 domain-containing protein.	Uncharacterized protein.	0.731
A0A1Y2G916	A0A1Y2GM03	SH3 domain-containing protein.	Uncharacterized protein.	0.731
A0A1Y2G916	A0A1Y2GTH7	SH3 domain-containing protein.	Uncharacterized protein.	0.731
A0A1Y2G916	A0A1Y2GY93	SH3 domain-containing protein.	Uncharacterized protein.	0.731
A0A1Y2GAE2	A0A1Y2GEJ1	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A1Y2GAE2	A0A1Y2GM03	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A1Y2GAE2	A0A1Y2GTH7	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A1Y2GAE2	A0A1Y2GY93	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A1Y2GD03	A0A1Y2G6I2	Putative GTP-binding protein rhoA.	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	0.623
A0A1Y2GD03	A0A1Y2GD24	Putative GTP-binding protein rhoA.	Uncharacterized protein.	0.482
A0A1Y2GD03	A0A1Y2GDG4	Putative GTP-binding protein rhoA.	FH2 domain-containing protein.	0.866
A0A1Y2GD03	A0A1Y2GJ34	Putative GTP-binding protein rhoA.	Lipase_3 domain-containing protein.	0.482
A0A1Y2GD03	A0A1Y2GV12	Putative GTP-binding protein rhoA.	Serine/threonine-protein phosphatase.	0.436