20 items (Lobosporangium transversale) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1Y2G6R2	Neurochondrin-domain-containing protein. (524 aa)
	A0A1Y2G6S5	Biopterin-dependent aromatic amino acid hydroxylase-domain-containing protein. (424 aa)
	A0A1Y2G719	PDZ-binding protein. (104 aa)
	A0A1Y2G772	Ion_trans domain-containing protein. (474 aa)
	A0A1Y2G8P8	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (672 aa)
	A0A1Y2G9K8	Protein serine/threonine kinase; Belongs to the protein kinase superfamily. (303 aa)
	A0A1Y2GAR4	Uncharacterized protein. (382 aa)
	A0A1Y2GB27	Uncharacterized protein. (289 aa)
	A0A1Y2GD36	Uncharacterized protein. (714 aa)
	A0A1Y2GD56	Molybdopterin molybdenumtransferase; Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released. (687 aa)
	A0A1Y2GFH0	Uncharacterized protein. (1086 aa)
	A0A1Y2GJU8	Uncharacterized protein. (611 aa)
	A0A1Y2GKH5	Ras-like GTP-binding protein RYL2. (216 aa)
	A0A1Y2GQ89	Uncharacterized protein. (329 aa)
	A0A1Y2GQK6	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	A0A1Y2GRB6	Uncharacterized protein. (516 aa)
	A0A1Y2GTN5	Biopterin-dependent aromatic amino acid hydroxylase-domain-containing protein. (435 aa)
	A0A1Y2GZC4	Protein serine/threonine kinase; Belongs to the protein kinase superfamily. (297 aa)
	A0A1Y2H2Y6	Uncharacterized protein. (579 aa)
	A0A1Y2H6B0	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family. (184 aa)

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2G772	A0A1Y2GB27	Ion_trans domain-containing protein.	Uncharacterized protein.	0.630
A0A1Y2GB27	A0A1Y2G772	Uncharacterized protein.	Ion_trans domain-containing protein.	0.630
A0A1Y2GFH0	A0A1Y2GQK6	Uncharacterized protein.	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family.	0.442
A0A1Y2GFH0	A0A1Y2H6B0	Uncharacterized protein.	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family.	0.442
A0A1Y2GQK6	A0A1Y2GFH0	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.442
A0A1Y2H6B0	A0A1Y2GFH0	ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.442