6 items (Lobosporangium transversale) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1Y2GJ64	Cell division control protein 42. (191 aa)
	A0A1Y2GT73	Cell division control protein 42. (191 aa)
	A0A1Y2GQJ6	Uncharacterized protein. (1188 aa)
	A0A1Y2GYS9	Rac gtpase. (192 aa)
	A0A1Y2GWR4	Ras-related C3 botulinum toxin substrate 1 protein. (192 aa)
	A0A1Y2GVY3	Rho GTPase activation protein. (780 aa)

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2GJ64	A0A1Y2GQJ6	Cell division control protein 42.	Uncharacterized protein.	0.916
A0A1Y2GJ64	A0A1Y2GVY3	Cell division control protein 42.	Rho GTPase activation protein.	0.845
A0A1Y2GQJ6	A0A1Y2GJ64	Uncharacterized protein.	Cell division control protein 42.	0.916
A0A1Y2GQJ6	A0A1Y2GT73	Uncharacterized protein.	Cell division control protein 42.	0.916
A0A1Y2GQJ6	A0A1Y2GWR4	Uncharacterized protein.	Ras-related C3 botulinum toxin substrate 1 protein.	0.906
A0A1Y2GQJ6	A0A1Y2GYS9	Uncharacterized protein.	Rac gtpase.	0.906
A0A1Y2GT73	A0A1Y2GQJ6	Cell division control protein 42.	Uncharacterized protein.	0.916
A0A1Y2GT73	A0A1Y2GVY3	Cell division control protein 42.	Rho GTPase activation protein.	0.845
A0A1Y2GVY3	A0A1Y2GJ64	Rho GTPase activation protein.	Cell division control protein 42.	0.845
A0A1Y2GVY3	A0A1Y2GT73	Rho GTPase activation protein.	Cell division control protein 42.	0.845
A0A1Y2GVY3	A0A1Y2GWR4	Rho GTPase activation protein.	Ras-related C3 botulinum toxin substrate 1 protein.	0.837
A0A1Y2GVY3	A0A1Y2GYS9	Rho GTPase activation protein.	Rac gtpase.	0.837
A0A1Y2GWR4	A0A1Y2GQJ6	Ras-related C3 botulinum toxin substrate 1 protein.	Uncharacterized protein.	0.906
A0A1Y2GWR4	A0A1Y2GVY3	Ras-related C3 botulinum toxin substrate 1 protein.	Rho GTPase activation protein.	0.837
A0A1Y2GYS9	A0A1Y2GQJ6	Rac gtpase.	Uncharacterized protein.	0.906
A0A1Y2GYS9	A0A1Y2GVY3	Rac gtpase.	Rho GTPase activation protein.	0.837