21 items (Lobosporangium transversale) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1Y2GBQ7	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily. (398 aa)
	A0A1Y2GBU6	Cyclin-like protein; Belongs to the cyclin family. (288 aa)
	A0A1Y2GCK2	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily. (318 aa)
	A0A1Y2GDW8	Cyclin-like protein; Belongs to the cyclin family. (284 aa)
	A0A1Y2GGY1	Ribosomal protein S27a-domain-containing protein. (155 aa)
	A0A1Y2GH07	Cyclin-like protein; Belongs to the cyclin family. (220 aa)
	A0A1Y2GHM4	Cell division control protein; Belongs to the CDC6/cdc18 family. (584 aa)
	A0A1Y2GL44	Cyclin-like protein; Belongs to the cyclin family. (411 aa)
	A0A1Y2GLF0	Ubiquitin-related domain-containing protein. (229 aa)
	A0A1Y2GMB2	Cyclin-like protein; Belongs to the cyclin family. (286 aa)
	A0A1Y2GN01	Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family. (414 aa)
	A0A1Y2GNI9	KxDL domain-containing protein. (151 aa)
	A0A1Y2GR87	Uncharacterized protein. (261 aa)
	A0A1Y2GV75	Uncharacterized protein. (489 aa)
	A0A1Y2GYB9	Ubiquitin. (74 aa)
	A0A1Y2GZI0	PI31 proteasome regulator N-terminal-domain-containing protein. (444 aa)
	A0A1Y2H1Z4	Uncharacterized protein. (305 aa)
	A0A1Y2H2Y7	Uncharacterized protein. (261 aa)
	A0A1Y2G564	26S proteasome non-ATPase regulatory subunit 5. (537 aa)
	A0A1Y2G6A3	Cyclin-dependent kinase 3-like protein; Belongs to the protein kinase superfamily. (305 aa)
	A0A1Y2G9H7	Ribosomal protein S27a-domain-containing protein. (155 aa)

Your Current Organism:

Lobosporangium transversale

NCBI taxonomy Id: 64571
Other names: ATCC 16960, CBS 357.67, Echinosporangium transversale, IMI 130776ii, L. transversale, NRRL 3116

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2G564	A0A1Y2G6A3	26S proteasome non-ATPase regulatory subunit 5.	Cyclin-dependent kinase 3-like protein; Belongs to the protein kinase superfamily.	0.615
A0A1Y2G564	A0A1Y2G9H7	26S proteasome non-ATPase regulatory subunit 5.	Ribosomal protein S27a-domain-containing protein.	0.944
A0A1Y2G564	A0A1Y2GBQ7	26S proteasome non-ATPase regulatory subunit 5.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.615
A0A1Y2G564	A0A1Y2GCK2	26S proteasome non-ATPase regulatory subunit 5.	Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.	0.615
A0A1Y2G564	A0A1Y2GDW8	26S proteasome non-ATPase regulatory subunit 5.	Cyclin-like protein; Belongs to the cyclin family.	0.671
A0A1Y2G564	A0A1Y2GGY1	26S proteasome non-ATPase regulatory subunit 5.	Ribosomal protein S27a-domain-containing protein.	0.944
A0A1Y2G564	A0A1Y2GHM4	26S proteasome non-ATPase regulatory subunit 5.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.655
A0A1Y2G564	A0A1Y2GLF0	26S proteasome non-ATPase regulatory subunit 5.	Ubiquitin-related domain-containing protein.	0.772
A0A1Y2G564	A0A1Y2GN01	26S proteasome non-ATPase regulatory subunit 5.	Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family.	0.645
A0A1Y2G564	A0A1Y2GR87	26S proteasome non-ATPase regulatory subunit 5.	Uncharacterized protein.	0.758
A0A1Y2G564	A0A1Y2GYB9	26S proteasome non-ATPase regulatory subunit 5.	Ubiquitin.	0.772
A0A1Y2G564	A0A1Y2GZI0	26S proteasome non-ATPase regulatory subunit 5.	PI31 proteasome regulator N-terminal-domain-containing protein.	0.754
A0A1Y2G564	A0A1Y2H1Z4	26S proteasome non-ATPase regulatory subunit 5.	Uncharacterized protein.	0.772
A0A1Y2G564	A0A1Y2H2Y7	26S proteasome non-ATPase regulatory subunit 5.	Uncharacterized protein.	0.758
A0A1Y2G6A3	A0A1Y2G564	Cyclin-dependent kinase 3-like protein; Belongs to the protein kinase superfamily.	26S proteasome non-ATPase regulatory subunit 5.	0.615
A0A1Y2G6A3	A0A1Y2G9H7	Cyclin-dependent kinase 3-like protein; Belongs to the protein kinase superfamily.	Ribosomal protein S27a-domain-containing protein.	0.743
A0A1Y2G6A3	A0A1Y2GBU6	Cyclin-dependent kinase 3-like protein; Belongs to the protein kinase superfamily.	Cyclin-like protein; Belongs to the cyclin family.	0.949
A0A1Y2G6A3	A0A1Y2GDW8	Cyclin-dependent kinase 3-like protein; Belongs to the protein kinase superfamily.	Cyclin-like protein; Belongs to the cyclin family.	0.957
A0A1Y2G6A3	A0A1Y2GGY1	Cyclin-dependent kinase 3-like protein; Belongs to the protein kinase superfamily.	Ribosomal protein S27a-domain-containing protein.	0.743
A0A1Y2G6A3	A0A1Y2GH07	Cyclin-dependent kinase 3-like protein; Belongs to the protein kinase superfamily.	Cyclin-like protein; Belongs to the cyclin family.	0.949