(5 nodes) ABC transporter, CbiO/EcfA subunit, and ABC transporters network (Aeromonas sobria)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OHY93230.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
	OHY93231.1	ECF transporter S component; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
	OHY93232.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	OHY93233.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	OHY93234.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (228 aa)

Your Current Organism:

Aeromonas sobria

NCBI taxonomy Id: 646
Other names: A. sobria, ATCC 43979, Aeromonas hybridization group 7 (HG7), Aeromonas sp. TH002, Aeromonas sp. TH004, Aeromonas sp. TH005, Aeromonas sp. TH018, Aeromonas sp. TH032, Aeromonas sp. TH035, Aeromonas sp. TH037, Aeromonas sp. TH040, Aeromonas sp. TH070, Aeromonas sp. TH082, Aeromonas sp. TH103, Aeromonas sp. TH112, Aeromonas sp. TH116, Aeromonas sp. TH119, CCUG 14830, CECT 4245, CIP 74.33, DSM 19176, JCM 2139, LMG 3783, LMG:3783, NCTC 12979, strain 208

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OHY93230.1	OHY93231.1	BJD16_02945	BJD16_02950	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ECF transporter S component; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
OHY93230.1	OHY93232.1	BJD16_02945	BJD16_02955	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
OHY93230.1	OHY93233.1	BJD16_02945	BJD16_02960	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
OHY93230.1	OHY93234.1	BJD16_02945	BJD16_02965	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.653
OHY93231.1	OHY93230.1	BJD16_02950	BJD16_02945	ECF transporter S component; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
OHY93231.1	OHY93232.1	BJD16_02950	BJD16_02955	ECF transporter S component; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
OHY93231.1	OHY93233.1	BJD16_02950	BJD16_02960	ECF transporter S component; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
OHY93231.1	OHY93234.1	BJD16_02950	BJD16_02965	ECF transporter S component; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.727
OHY93232.1	OHY93230.1	BJD16_02955	BJD16_02945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
OHY93232.1	OHY93231.1	BJD16_02955	BJD16_02950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ECF transporter S component; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
OHY93232.1	OHY93233.1	BJD16_02955	BJD16_02960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OHY93232.1	OHY93234.1	BJD16_02955	BJD16_02965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.875
OHY93233.1	OHY93230.1	BJD16_02960	BJD16_02945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
OHY93233.1	OHY93231.1	BJD16_02960	BJD16_02950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ECF transporter S component; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
OHY93233.1	OHY93232.1	BJD16_02960	BJD16_02955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OHY93233.1	OHY93234.1	BJD16_02960	BJD16_02965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.910
OHY93234.1	OHY93230.1	BJD16_02965	BJD16_02945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
OHY93234.1	OHY93231.1	BJD16_02965	BJD16_02950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ECF transporter S component; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
OHY93234.1	OHY93232.1	BJD16_02965	BJD16_02955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
OHY93234.1	OHY93233.1	BJD16_02965	BJD16_02960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910

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