STRINGSTRING
AFM40841.1 AFM40841.1 AFM40842.1 AFM40842.1 AFM40843.1 AFM40843.1 AFM40844.1 AFM40844.1 AFM40845.1 AFM40845.1 AFM40846.1 AFM40846.1 AFM40847.1 AFM40847.1 AFM40848.1 AFM40848.1 AFM40849.1 AFM40849.1 AFM40850.1 AFM40850.1 AFM40851.1 AFM40851.1 AFM40852.1 AFM40852.1 AFM40853.1 AFM40853.1 AFM40854.1 AFM40854.1 AFM40855.1 AFM40855.1 AFM40856.1 AFM40856.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AFM40841.1PFAM: Prokaryotic protein of unknown function (DUF849). (269 aa)
AFM40842.1PFAM: Thioesterase superfamily. (132 aa)
AFM40843.1Putative cobalamin binding protein; PFAM: B12 binding domain. (247 aa)
AFM40844.1PFAM: D-Lysine 5,6-aminomutase alpha subunit. (569 aa)
AFM40845.1Hypothetical protein. (363 aa)
AFM40846.1L-erythro-3,5-diaminohexanoate dehydrogenase. (345 aa)
AFM40847.1PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; TIGRFAM: KamA family protein; lysine-2,3-aminomutase. (414 aa)
AFM40848.1PAS domain S-box; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box. (465 aa)
AFM40849.1PAS domain S-box; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box. (468 aa)
AFM40850.1Hypothetical protein; PFAM: Dihydrodipicolinate reductase, N-terminus. (350 aa)
AFM40851.1Hypothetical protein. (114 aa)
AFM40852.1Cysteine synthase; PFAM: Pyridoxal-phosphate dependent enzyme. (470 aa)
AFM40853.1D-ornithine 4,5-aminomutase S subunit. (123 aa)
AFM40854.1Putative cobalamin binding protein; PFAM: D-Lysine 5,6-aminomutase alpha subunit; B12 binding domain. (736 aa)
AFM40855.1TIGRFAM: conserved hypothetical protein. (453 aa)
AFM40856.1Putative amino acid racemase; PFAM: Alanine racemase, N-terminal domain. (355 aa)
Your Current Organism:
Desulfosporosinus acidiphilus
NCBI taxonomy Id: 646529
Other names: D. acidiphilus SJ4, Desulfosporosinus acidiphilus DSM 22704, Desulfosporosinus acidiphilus SJ4, Desulfosporosinus acidiphilus str. SJ4, Desulfosporosinus acidiphilus strain SJ4, Desulfosporosinus sp. SJ4
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