(22 nodes) Nitrogen metabolism network (Desulfosporosinus acidiphilus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	AFM39211.1	Hypothetical protein. (426 aa)
	AFM39802.1	PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II. (1521 aa)
	AFM39803.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit. (493 aa)
	AFM39875.1	Hypothetical protein. (421 aa)
	AFM39993.1	PFAM: Cytochrome c; manually curated. (131 aa)
	AFM39994.1	Nitric oxide reductase large subunit; PFAM: Cytochrome C and Quinol oxidase polypeptide I. (462 aa)
	AFM40132.1	nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region. (171 aa)
	AFM40834.1	Hypothetical protein. (257 aa)
	AFM40925.1	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (212 aa)
	AFM41028.1	PFAM: Amino acid kinase family; TIGRFAM: carbamate kinase; Belongs to the carbamate kinase family. (316 aa)
	AFM41138.1	nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region. (81 aa)
	AFM41227.1	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal. (697 aa)
	AFM41236.1	PFAM: Nitrate reductase gamma subunit. (333 aa)
	AFM41344.1	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (250 aa)
	AFM41608.1	nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region. (157 aa)
	AFM41619.1	PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (445 aa)
	AFM42009.1	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I. (442 aa)
	AFM42235.1	NADPH-dependent glutamate synthase, homotetrameric; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase small subunit family protein, proteobacterial; glutamate synthase (NADPH), homotetrameric. (463 aa)
	AFM42899.1	Mo-nitrogenase MoFe protein subunit NifK; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family. (472 aa)
	AFM42900.1	Mo-nitrogenase MoFe protein subunit NifD precursor; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase alpha chain; nitrogenase molybdenum-iron protein alpha chain. (478 aa)
	nifH	Mo-nitrogenase iron protein subunit NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (275 aa)
	hcp	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (547 aa)

Your Current Organism:

Desulfosporosinus acidiphilus

NCBI taxonomy Id: 646529
Other names: D. acidiphilus SJ4, Desulfosporosinus acidiphilus DSM 22704, Desulfosporosinus acidiphilus SJ4, Desulfosporosinus acidiphilus str. SJ4, Desulfosporosinus acidiphilus strain SJ4, Desulfosporosinus sp. SJ4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFM39211.1	AFM39875.1	Desaci_0102	Desaci_0818	Hypothetical protein.	Hypothetical protein.	0.906
AFM39211.1	AFM40132.1	Desaci_0102	Desaci_1093	Hypothetical protein.	nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region.	0.959
AFM39211.1	AFM40834.1	Desaci_0102	Desaci_1854	Hypothetical protein.	Hypothetical protein.	0.935
AFM39211.1	AFM41138.1	Desaci_0102	Desaci_2176	Hypothetical protein.	nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region.	0.948
AFM39211.1	AFM41236.1	Desaci_0102	Desaci_2281	Hypothetical protein.	PFAM: Nitrate reductase gamma subunit.	0.932
AFM39211.1	AFM41608.1	Desaci_0102	Desaci_2676	Hypothetical protein.	nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region.	0.916
AFM39211.1	hcp	Desaci_0102	Desaci_4475	Hypothetical protein.	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.905
AFM39802.1	AFM39803.1	Desaci_0741	Desaci_0742	PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.	PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit.	0.999
AFM39802.1	AFM41227.1	Desaci_0741	Desaci_2272	PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal.	0.972
AFM39802.1	AFM41619.1	Desaci_0741	Desaci_2687	PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.	PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.997
AFM39802.1	AFM42009.1	Desaci_0741	Desaci_3102	PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.	0.983
AFM39802.1	AFM42235.1	Desaci_0741	Desaci_3340	PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.	NADPH-dependent glutamate synthase, homotetrameric; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase small subunit family protein, proteobacterial; glutamate synthase (NADPH), homotetrameric.	0.999
AFM39802.1	nifH	Desaci_0741	Desaci_4036	PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.	Mo-nitrogenase iron protein subunit NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.	0.683
AFM39803.1	AFM39802.1	Desaci_0742	Desaci_0741	PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit.	PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.	0.999
AFM39803.1	AFM41227.1	Desaci_0742	Desaci_2272	PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit.	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal.	0.910
AFM39803.1	AFM41619.1	Desaci_0742	Desaci_2687	PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit.	PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.961
AFM39803.1	AFM42009.1	Desaci_0742	Desaci_3102	PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit.	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.	0.939
AFM39803.1	AFM42235.1	Desaci_0742	Desaci_3340	PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit.	NADPH-dependent glutamate synthase, homotetrameric; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase small subunit family protein, proteobacterial; glutamate synthase (NADPH), homotetrameric.	0.916
AFM39875.1	AFM39211.1	Desaci_0818	Desaci_0102	Hypothetical protein.	Hypothetical protein.	0.906
AFM39875.1	AFM40132.1	Desaci_0818	Desaci_1093	Hypothetical protein.	nitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit; PFAM: NapC/NirT cytochrome c family, N-terminal region.	0.956

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