10 items (Trachymyrmex zeteki) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC60_14163	Metastasis-associated protein MTA1. (951 aa)
	ALC60_10520	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1061 aa)
	ALC60_08919	High mobility group protein DSP1. (203 aa)
	ALC60_08225	Lysine-specific histone demethylase 1A. (640 aa)
	ALC60_08229	Lysine-specific histone demethylase 1A. (390 aa)
	ALC60_04327	Chromodomain-helicase-DNA-binding protein Mi-2 like protein. (1934 aa)
	ALC60_04107	Transcriptional repressor p66-alpha. (632 aa)
	ALC60_03790	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (433 aa)
	ALC60_02715	REST corepressor 2. (525 aa)
	ALC60_00683	Methyl-CpG-binding domain protein 3. (221 aa)

Your Current Organism:

Trachymyrmex zeteki

NCBI taxonomy Id: 64791
Other names: T. zeteki

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC60_00683	ALC60_02715	A0A151XIY4	A0A151XD58	Methyl-CpG-binding domain protein 3.	REST corepressor 2.	0.767
ALC60_00683	ALC60_03790	A0A151XIY4	A0A151XAF7	Methyl-CpG-binding domain protein 3.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.942
ALC60_00683	ALC60_04107	A0A151XIY4	A0A151X961	Methyl-CpG-binding domain protein 3.	Transcriptional repressor p66-alpha.	0.958
ALC60_00683	ALC60_04327	A0A151XIY4	A0A151X8W2	Methyl-CpG-binding domain protein 3.	Chromodomain-helicase-DNA-binding protein Mi-2 like protein.	0.982
ALC60_00683	ALC60_08225	A0A151XIY4	A0A151WXY9	Methyl-CpG-binding domain protein 3.	Lysine-specific histone demethylase 1A.	0.755
ALC60_00683	ALC60_08229	A0A151XIY4	A0A151WY49	Methyl-CpG-binding domain protein 3.	Lysine-specific histone demethylase 1A.	0.755
ALC60_00683	ALC60_08919	A0A151XIY4	A0A151WVR2	Methyl-CpG-binding domain protein 3.	High mobility group protein DSP1.	0.646
ALC60_00683	ALC60_10520	A0A151XIY4	A0A151WRG8	Methyl-CpG-binding domain protein 3.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.886
ALC60_00683	ALC60_14163	A0A151XIY4	A0A151WG30	Methyl-CpG-binding domain protein 3.	Metastasis-associated protein MTA1.	0.987
ALC60_02715	ALC60_00683	A0A151XD58	A0A151XIY4	REST corepressor 2.	Methyl-CpG-binding domain protein 3.	0.767
ALC60_02715	ALC60_03790	A0A151XD58	A0A151XAF7	REST corepressor 2.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.936
ALC60_02715	ALC60_04107	A0A151XD58	A0A151X961	REST corepressor 2.	Transcriptional repressor p66-alpha.	0.675
ALC60_02715	ALC60_04327	A0A151XD58	A0A151X8W2	REST corepressor 2.	Chromodomain-helicase-DNA-binding protein Mi-2 like protein.	0.970
ALC60_02715	ALC60_08225	A0A151XD58	A0A151WXY9	REST corepressor 2.	Lysine-specific histone demethylase 1A.	0.983
ALC60_02715	ALC60_08229	A0A151XD58	A0A151WY49	REST corepressor 2.	Lysine-specific histone demethylase 1A.	0.980
ALC60_02715	ALC60_08919	A0A151XD58	A0A151WVR2	REST corepressor 2.	High mobility group protein DSP1.	0.782
ALC60_02715	ALC60_10520	A0A151XD58	A0A151WRG8	REST corepressor 2.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.900
ALC60_02715	ALC60_14163	A0A151XD58	A0A151WG30	REST corepressor 2.	Metastasis-associated protein MTA1.	0.711
ALC60_03790	ALC60_00683	A0A151XAF7	A0A151XIY4	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Methyl-CpG-binding domain protein 3.	0.942
ALC60_03790	ALC60_02715	A0A151XAF7	A0A151XD58	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	REST corepressor 2.	0.936