33 items (Trachymyrmex zeteki) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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experimentally determined

Predicted Interactions

gene neighborhood

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protein homology

Your Input:
	ALC60_06848	Double-stranded RNA-binding protein Staufen like protein 2. (788 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (67 aa)
	ALC60_00820	Uncharacterized protein. (235 aa)
	ALC60_00839	CCR4-NOT transcription complex subunit 3. (687 aa)
	ALC60_00945	CCR4-NOT transcription complex subunit 1. (2613 aa)
	ALC60_02960	Scavenger mRNA-decapping enzyme DcpS. (348 aa)
	ALC60_03711	DNA-directed RNA polymerase II subunit RPB7. (266 aa)
	ALC60_03926	mRNA-decapping enzyme 1A. (452 aa)
	ALC60_04528	CCR4-NOT transcription complex subunit 2. (459 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (138 aa)
	ALC60_06191	Enhancer of mRNA-decapping protein 4. (1071 aa)
	ALC60_06438	CCR4-NOT transcription complex subunit 7. (315 aa)
	ALC60_13863	Cell differentiation protein RCD1 like protein. (308 aa)
	ALC60_13498	RNA-binding protein 9. (295 aa)
	ALC60_13496	Uncharacterized protein. (303 aa)
	ALC60_13238	5'-3' exoribonuclease 1. (1684 aa)
	ALC60_13161	Roquin. (998 aa)
	ALC60_12539	mRNA-decapping enzyme 2. (460 aa)
	ALC60_06237	U6 snRNA-associated Sm-like protein LSm6. (106 aa)
	ALC60_06843	Protein LSM14 like protein B. (555 aa)
	ALC60_07620	Maternal protein exuperantia. (415 aa)
	ALC60_07557	Uncharacterized protein. (2036 aa)
	ALC60_11490	Enhancer of mRNA-decapping protein 3. (468 aa)
	ALC60_11051	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family. (444 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (675 aa)
	ALC60_12041	Eukaryotic translation initiation factor 4E transporter. (1297 aa)
	ALC60_09763	DIS3-like exonuclease 2; Belongs to the RNR ribonuclease family. (924 aa)
	ALC60_09140	Protein PAT1 like protein 1. (727 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
	ALC60_08065	Protein argonaute-2; Belongs to the argonaute family. (929 aa)
	ALC60_07975	Wilms tumor protein 1-interacting protein like protein. (882 aa)
	ALC60_11779	Uncharacterized protein. (832 aa)
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1353 aa)

Your Current Organism:

Trachymyrmex zeteki

NCBI taxonomy Id: 64791
Other names: T. zeteki

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC60_00820	ALC60_03926	A0A151XJ24	A0A151X9Y4	Uncharacterized protein.	mRNA-decapping enzyme 1A.	0.771
ALC60_00820	ALC60_06191	A0A151XJ24	A0A151X3L7	Uncharacterized protein.	Enhancer of mRNA-decapping protein 4.	0.702
ALC60_00820	ALC60_06237	A0A151XJ24	A0A151X381	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm6.	0.981
ALC60_00820	ALC60_06843	A0A151XJ24	A0A151X1N9	Uncharacterized protein.	Protein LSM14 like protein B.	0.406
ALC60_00820	ALC60_09140	A0A151XJ24	A0A151WVP9	Uncharacterized protein.	Protein PAT1 like protein 1.	0.972
ALC60_00820	ALC60_11051	A0A151XJ24	A0A151WPT3	Uncharacterized protein.	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	0.893
ALC60_00820	ALC60_11490	A0A151XJ24	A0A151WNW9	Uncharacterized protein.	Enhancer of mRNA-decapping protein 3.	0.842
ALC60_00820	ALC60_12539	A0A151XJ24	A0A151WKJ5	Uncharacterized protein.	mRNA-decapping enzyme 2.	0.876
ALC60_00820	ALC60_13238	A0A151XJ24	A0A151WIP5	Uncharacterized protein.	5'-3' exoribonuclease 1.	0.926
ALC60_00820	LSM1	A0A151XJ24	A0A151X6I3	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.975
ALC60_00820	LSM4	A0A151XJ24	A0A151WWQ9	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.977
ALC60_00839	ALC60_00945	A0A151XI80	A0A151XHX8	CCR4-NOT transcription complex subunit 3.	CCR4-NOT transcription complex subunit 1.	0.998
ALC60_00839	ALC60_04528	A0A151XI80	A0A151X7U7	CCR4-NOT transcription complex subunit 3.	CCR4-NOT transcription complex subunit 2.	0.998
ALC60_00839	ALC60_06438	A0A151XI80	A0A151X397	CCR4-NOT transcription complex subunit 3.	CCR4-NOT transcription complex subunit 7.	0.996
ALC60_00839	ALC60_07557	A0A151XI80	A0A151WZJ1	CCR4-NOT transcription complex subunit 3.	Uncharacterized protein.	0.782
ALC60_00839	ALC60_09140	A0A151XI80	A0A151WVP9	CCR4-NOT transcription complex subunit 3.	Protein PAT1 like protein 1.	0.982
ALC60_00839	ALC60_11051	A0A151XI80	A0A151WPT3	CCR4-NOT transcription complex subunit 3.	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	0.968
ALC60_00839	ALC60_11490	A0A151XI80	A0A151WNW9	CCR4-NOT transcription complex subunit 3.	Enhancer of mRNA-decapping protein 3.	0.505
ALC60_00839	ALC60_12041	A0A151XI80	A0A151WMQ3	CCR4-NOT transcription complex subunit 3.	Eukaryotic translation initiation factor 4E transporter.	0.421
ALC60_00839	ALC60_13161	A0A151XI80	A0A151WJ15	CCR4-NOT transcription complex subunit 3.	Roquin.	0.788