(26 nodes) snoRNA binding network (Trachymyrmex zeteki)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC60_08682	U3 small nucleolar RNA-associated protein 6 like protein. (606 aa)
	ALC60_00658	DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family. (2692 aa)
	ALC60_00735	U3 small nucleolar RNA-associated protein 15 like protein. (524 aa)
	ALC60_00729	Nuclear fragile X mental retardation-interacting protein 1. (383 aa)
	ALC60_00657	DNA-dependent protein kinase catalytic subunit. (1082 aa)
	ALC60_01145	Transducin beta-like protein 3; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (1264 aa)
	ALC60_05253	Nucleolar protein 56. (539 aa)
	ALC60_05804	H/ACA ribonucleoprotein complex subunit 3. (37 aa)
	ALC60_06027	Bystin. (434 aa)
	ALC60_06565	U3 small nucleolar ribonucleoprotein. (312 aa)
	ALC60_07534	HEAT repeat-containing protein 1. (2059 aa)
	ALC60_08378	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (118 aa)
	ALC60_14462	Pre-rRNA-processing protein TSR1 like protein. (785 aa)
	ALC60_09238	Nucleolar protein 14. (823 aa)
	ALC60_09174	U3 small nucleolar ribonucleoprotein. (273 aa)
	ALC60_09212	WD repeat-containing protein 3. (925 aa)
	ALC60_09936	Uncharacterized protein. (128 aa)
	ALC60_09926	Ribosome biogenesis protein BMS1 like protein. (1242 aa)
	ALC60_09935	Uncharacterized protein. (595 aa)
	ALC60_09933	Uncharacterized protein. (998 aa)
	ALC60_10106	U3 small nucleolar RNA-interacting protein 2. (447 aa)
	ALC60_11335	Telomerase Cajal body protein 1. (489 aa)
	ALC60_12897	Digestive organ expansion factor like protein. (775 aa)
	ALC60_14216	Nucleolar protein 58. (700 aa)
	ALC60_14645	H/ACA ribonucleoprotein complex subunit 2-like protein. (156 aa)
	ALC60_14680	X-ray repair cross-complementing protein 5. (743 aa)

Your Current Organism:

Trachymyrmex zeteki

NCBI taxonomy Id: 64791
Other names: T. zeteki

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC60_00657	ALC60_00658	A0A151XIM4	A0A151XJ54	DNA-dependent protein kinase catalytic subunit.	DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.	0.945
ALC60_00657	ALC60_14680	A0A151XIM4	A0A151WEG0	DNA-dependent protein kinase catalytic subunit.	X-ray repair cross-complementing protein 5.	0.982
ALC60_00658	ALC60_00657	A0A151XJ54	A0A151XIM4	DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.	DNA-dependent protein kinase catalytic subunit.	0.945
ALC60_00658	ALC60_14680	A0A151XJ54	A0A151WEG0	DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.	X-ray repair cross-complementing protein 5.	0.982
ALC60_00729	ALC60_05253	A0A151XJ09	A0A151X6Q3	Nuclear fragile X mental retardation-interacting protein 1.	Nucleolar protein 56.	0.405
ALC60_00729	ALC60_14216	A0A151XJ09	A0A151WFX4	Nuclear fragile X mental retardation-interacting protein 1.	Nucleolar protein 58.	0.405
ALC60_00729	ALC60_14645	A0A151XJ09	A0A151WED0	Nuclear fragile X mental retardation-interacting protein 1.	H/ACA ribonucleoprotein complex subunit 2-like protein.	0.513
ALC60_00735	ALC60_01145	A0A151XJ20	A0A151XHR8	U3 small nucleolar RNA-associated protein 15 like protein.	Transducin beta-like protein 3; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.999
ALC60_00735	ALC60_05253	A0A151XJ20	A0A151X6Q3	U3 small nucleolar RNA-associated protein 15 like protein.	Nucleolar protein 56.	0.999
ALC60_00735	ALC60_06027	A0A151XJ20	A0A151X427	U3 small nucleolar RNA-associated protein 15 like protein.	Bystin.	0.999
ALC60_00735	ALC60_06565	A0A151XJ20	A0A151X2C1	U3 small nucleolar RNA-associated protein 15 like protein.	U3 small nucleolar ribonucleoprotein.	0.992
ALC60_00735	ALC60_07534	A0A151XJ20	A0A151WZL5	U3 small nucleolar RNA-associated protein 15 like protein.	HEAT repeat-containing protein 1.	0.999
ALC60_00735	ALC60_08378	A0A151XJ20	A0A151WXE5	U3 small nucleolar RNA-associated protein 15 like protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.463
ALC60_00735	ALC60_08682	A0A151XJ20	A0A151WW60	U3 small nucleolar RNA-associated protein 15 like protein.	U3 small nucleolar RNA-associated protein 6 like protein.	0.999
ALC60_00735	ALC60_09174	A0A151XJ20	A0A151WV62	U3 small nucleolar RNA-associated protein 15 like protein.	U3 small nucleolar ribonucleoprotein.	0.988
ALC60_00735	ALC60_09212	A0A151XJ20	A0A151WUZ6	U3 small nucleolar RNA-associated protein 15 like protein.	WD repeat-containing protein 3.	0.999
ALC60_00735	ALC60_09238	A0A151XJ20	A0A151WVE8	U3 small nucleolar RNA-associated protein 15 like protein.	Nucleolar protein 14.	0.993
ALC60_00735	ALC60_09926	A0A151XJ20	A0A151WT24	U3 small nucleolar RNA-associated protein 15 like protein.	Ribosome biogenesis protein BMS1 like protein.	0.999
ALC60_00735	ALC60_10106	A0A151XJ20	A0A151WS90	U3 small nucleolar RNA-associated protein 15 like protein.	U3 small nucleolar RNA-interacting protein 2.	0.999
ALC60_00735	ALC60_12897	A0A151XJ20	A0A151WJA1	U3 small nucleolar RNA-associated protein 15 like protein.	Digestive organ expansion factor like protein.	0.911