(59 nodes) Regulation of transmembrane transport network (Trachymyrmex zeteki)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC60_09359	Uncharacterized protein. (144 aa)
	ALC60_09167	Uncharacterized protein. (84 aa)
	ALC60_09231	Uncharacterized protein. (150 aa)
	ALC60_09171	Uncharacterized protein. (160 aa)
	ALC60_09168	Uncharacterized protein. (282 aa)
	ALC60_08703	Dystrophin-like protein 1. (735 aa)
	ALC60_08828	GTP-binding protein RAD. (246 aa)
	ALC60_08573	Uncharacterized protein. (279 aa)
	ALC60_08171	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family. (2282 aa)
	ALC60_07972	Voltage-dependent L-type calcium channel subunit beta-2. (610 aa)
	ALC60_07818	Protein Malvolio. (573 aa)
	ALC60_07930	Voltage-dependent T-type calcium channel subunit alpha-1G. (144 aa)
	ALC60_07449	GTP-binding protein REM 1. (300 aa)
	ALC60_07527	Whirlin. (655 aa)
	ALC60_07279	ATP-sensitive inward rectifier potassium channel 12. (459 aa)
	ALC60_07104	Voltage-dependent calcium channel subunit alpha-2/delta-3. (1147 aa)
	ALC60_06793	Uncharacterized protein. (159 aa)
	ALC60_06974	Tetraspanin-31; Belongs to the tetraspanin (TM4SF) family. (227 aa)
	ALC60_06578	Protein transport protein Sec61 subunit alpha isoform 2. (509 aa)
	ALC60_06457	GTP-binding protein RAD. (856 aa)
	ALC60_06386	Potassium channel subfamily K member 13; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (426 aa)
	ALC60_06229	Voltage-gated potassium channel subunit beta-2. (452 aa)
	ALC60_05848	Potassium voltage-gated channel protein eag. (567 aa)
	ALC60_05847	Potassium voltage-gated channel protein eag. (485 aa)
	ALC60_05460	Uncharacterized protein. (125 aa)
	ALC60_05474	Kv channel-interacting protein 4. (242 aa)
	ALC60_05146	Protein quiver. (101 aa)
	ALC60_04795	E3 ubiquitin-protein ligase HECW2. (1301 aa)
	ALC60_04628	Uncharacterized protein. (921 aa)
	ALC60_04487	Uncharacterized protein. (155 aa)
	ALC60_04289	Cyclin N-terminal domain-containing protein 1. (274 aa)
	ALC60_04210	Huntingtin. (2886 aa)
	ALC60_04034	Uncharacterized protein. (100 aa)
	ALC60_04035	Ig-like domain-containing protein. (245 aa)
	ALC60_03693	Uncharacterized protein. (187 aa)
	ALC60_14788	Serine/threonine-protein kinase WNK3. (2892 aa)
	ALC60_03156	Uncharacterized protein. (149 aa)
	ALC60_03155	Neuropilin and tolloid-like protein 2. (809 aa)
	ALC60_02699	Thyroid adenoma-associated protein. (1293 aa)
	ALC60_02790	Voltage-dependent calcium channel type A subunit alpha-1. (2210 aa)
	ALC60_02408	E3 ubiquitin-protein ligase. (822 aa)
	ALC60_01387	Calcium-binding protein p22. (188 aa)
	ALC60_01321	Potassium voltage-gated channel subfamily H member 7. (393 aa)
	ALC60_00536	Ras-specific guanine nucleotide-releasing factor 1. (1396 aa)
	ALC60_14255	Autophagy protein 5; Involved in autophagic vesicle formation. (265 aa)
	ALC60_14277	Cytochrome c oxidase subunit 6A, mitochondrial. (108 aa)
	ALC60_14026	Voltage-dependent calcium channel subunit alpha-2/delta-3. (1113 aa)
	ALC60_13501	Dimer_Tnp_hAT domain-containing protein. (282 aa)
	ALC60_12759	Voltage-dependent calcium channel gamma-5 subunit. (539 aa)
	ALC60_12613	Kv channel-interacting protein 4. (405 aa)
	ALC60_12457	SH3 and cysteine-rich domain-containing protein 3. (868 aa)
	ALC60_12406	PRA1 family protein. (185 aa)
	ALC60_11961	Kv channel-interacting protein 2. (214 aa)
	ALC60_11418	Stromal interaction molecule like protein. (695 aa)
	ALC60_11159	DUF659 domain-containing protein. (280 aa)
	ALC60_10860	Uncharacterized protein. (396 aa)
	ALC60_10371	Sarcolemmal membrane-associated protein. (782 aa)
	ALC60_10009	Two pore calcium channel protein 1. (837 aa)
	ALC60_09818	C2 domain-containing protein. (1750 aa)

Your Current Organism:

Trachymyrmex zeteki

NCBI taxonomy Id: 64791
Other names: T. zeteki

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC60_00536	ALC60_02790	A0A151XIT7	A0A151XDH7	Ras-specific guanine nucleotide-releasing factor 1.	Voltage-dependent calcium channel type A subunit alpha-1.	0.522
ALC60_00536	ALC60_06457	A0A151XIT7	A0A151X322	Ras-specific guanine nucleotide-releasing factor 1.	GTP-binding protein RAD.	0.740
ALC60_00536	ALC60_07104	A0A151XIT7	A0A151X0S3	Ras-specific guanine nucleotide-releasing factor 1.	Voltage-dependent calcium channel subunit alpha-2/delta-3.	0.635
ALC60_00536	ALC60_07449	A0A151XIT7	A0A151WZR7	Ras-specific guanine nucleotide-releasing factor 1.	GTP-binding protein REM 1.	0.740
ALC60_00536	ALC60_07972	A0A151XIT7	A0A151WYC9	Ras-specific guanine nucleotide-releasing factor 1.	Voltage-dependent L-type calcium channel subunit beta-2.	0.841
ALC60_00536	ALC60_08171	A0A151XIT7	A0A151WY92	Ras-specific guanine nucleotide-releasing factor 1.	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	0.522
ALC60_00536	ALC60_08828	A0A151XIT7	A0A151WWF1	Ras-specific guanine nucleotide-releasing factor 1.	GTP-binding protein RAD.	0.740
ALC60_00536	ALC60_10009	A0A151XIT7	A0A151WSM0	Ras-specific guanine nucleotide-releasing factor 1.	Two pore calcium channel protein 1.	0.522
ALC60_00536	ALC60_12457	A0A151XIT7	A0A151WKX0	Ras-specific guanine nucleotide-releasing factor 1.	SH3 and cysteine-rich domain-containing protein 3.	0.559
ALC60_00536	ALC60_12759	A0A151XIT7	A0A151WKJ4	Ras-specific guanine nucleotide-releasing factor 1.	Voltage-dependent calcium channel gamma-5 subunit.	0.862
ALC60_00536	ALC60_14026	A0A151XIT7	A0A151WGK1	Ras-specific guanine nucleotide-releasing factor 1.	Voltage-dependent calcium channel subunit alpha-2/delta-3.	0.635
ALC60_01321	ALC60_06229	A0A151XH57	A0A151X3T1	Potassium voltage-gated channel subfamily H member 7.	Voltage-gated potassium channel subunit beta-2.	0.713
ALC60_01387	ALC60_02790	A0A151XGR1	A0A151XDH7	Calcium-binding protein p22.	Voltage-dependent calcium channel type A subunit alpha-1.	0.522
ALC60_01387	ALC60_05847	A0A151XGR1	A0A151X484	Calcium-binding protein p22.	Potassium voltage-gated channel protein eag.	0.527
ALC60_01387	ALC60_05848	A0A151XGR1	A0A151X474	Calcium-binding protein p22.	Potassium voltage-gated channel protein eag.	0.527
ALC60_01387	ALC60_06457	A0A151XGR1	A0A151X322	Calcium-binding protein p22.	GTP-binding protein RAD.	0.415
ALC60_01387	ALC60_07449	A0A151XGR1	A0A151WZR7	Calcium-binding protein p22.	GTP-binding protein REM 1.	0.415
ALC60_01387	ALC60_08171	A0A151XGR1	A0A151WY92	Calcium-binding protein p22.	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	0.522
ALC60_01387	ALC60_08828	A0A151XGR1	A0A151WWF1	Calcium-binding protein p22.	GTP-binding protein RAD.	0.415
ALC60_01387	ALC60_10009	A0A151XGR1	A0A151WSM0	Calcium-binding protein p22.	Two pore calcium channel protein 1.	0.522