(23 nodes) Demethylation network (Trachymyrmex zeteki)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC60_12397	Histone lysine demethylase PHF8. (962 aa)
	ALC60_00288	Putative alpha-ketoglutarate-dependent dioxygenase ABH4. (299 aa)
	ALC60_01052	Uncharacterized protein. (160 aa)
	ALC60_04460	Lysine-specific demethylase 8. (534 aa)
	ALC60_04755	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (356 aa)
	ALC60_04922	Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated. (380 aa)
	ALC60_05734	Lysine-specific demethylase 5A. (1653 aa)
	ALC60_07081	Lysine-specific demethylase 6A. (1104 aa)
	ALC60_07075	Lysine-specific demethylase 6B. (457 aa)
	ALC60_07074	Lysine-specific demethylase 6A. (503 aa)
	ALC60_08064	Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase; Belongs to the ROX family. (605 aa)
	ALC60_08229	Lysine-specific histone demethylase 1A. (390 aa)
	ALC60_08225	Lysine-specific histone demethylase 1A. (640 aa)
	ALC60_08128	JmjC domain-containing histone demethylation protein 1. (980 aa)
	ALC60_08708	Putative lysine-specific demethylase 4B. (1629 aa)
	ALC60_09439	Lysine-specific demethylase 3B. (1696 aa)
	ALC60_09432	Uncharacterized protein. (647 aa)
	ALC60_09437	Uncharacterized protein. (366 aa)
	ALC60_09428	Putative JmjC domain-containing histone demethylation protein 2C. (303 aa)
	ALC60_09427	Uncharacterized protein. (182 aa)
	ALC60_09974	CXXC-type zinc finger protein 4. (374 aa)
	ALC60_09972	Uncharacterized protein. (179 aa)
	ALC60_09971	Methylcytosine dioxygenase TET2. (2110 aa)

Your Current Organism:

Trachymyrmex zeteki

NCBI taxonomy Id: 64791
Other names: T. zeteki

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC60_01052	ALC60_05734	A0A151XI08	A0A151X4K7	Uncharacterized protein.	Lysine-specific demethylase 5A.	0.584
ALC60_01052	ALC60_08708	A0A151XI08	A0A151WW24	Uncharacterized protein.	Putative lysine-specific demethylase 4B.	0.420
ALC60_04460	ALC60_05734	A0A151X8A2	A0A151X4K7	Lysine-specific demethylase 8.	Lysine-specific demethylase 5A.	0.502
ALC60_04460	ALC60_08064	A0A151X8A2	A0A151WYK4	Lysine-specific demethylase 8.	Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase; Belongs to the ROX family.	0.426
ALC60_04460	ALC60_08128	A0A151X8A2	A0A151WXX1	Lysine-specific demethylase 8.	JmjC domain-containing histone demethylation protein 1.	0.440
ALC60_04460	ALC60_08708	A0A151X8A2	A0A151WW24	Lysine-specific demethylase 8.	Putative lysine-specific demethylase 4B.	0.529
ALC60_04922	ALC60_05734	A0A151X732	A0A151X4K7	Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated.	Lysine-specific demethylase 5A.	0.567
ALC60_05734	ALC60_01052	A0A151X4K7	A0A151XI08	Lysine-specific demethylase 5A.	Uncharacterized protein.	0.584
ALC60_05734	ALC60_04460	A0A151X4K7	A0A151X8A2	Lysine-specific demethylase 5A.	Lysine-specific demethylase 8.	0.502
ALC60_05734	ALC60_04922	A0A151X4K7	A0A151X732	Lysine-specific demethylase 5A.	Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated.	0.567
ALC60_05734	ALC60_08128	A0A151X4K7	A0A151WXX1	Lysine-specific demethylase 5A.	JmjC domain-containing histone demethylation protein 1.	0.690
ALC60_05734	ALC60_08225	A0A151X4K7	A0A151WXY9	Lysine-specific demethylase 5A.	Lysine-specific histone demethylase 1A.	0.536
ALC60_05734	ALC60_08229	A0A151X4K7	A0A151WY49	Lysine-specific demethylase 5A.	Lysine-specific histone demethylase 1A.	0.536
ALC60_05734	ALC60_08708	A0A151X4K7	A0A151WW24	Lysine-specific demethylase 5A.	Putative lysine-specific demethylase 4B.	0.561
ALC60_05734	ALC60_12397	A0A151X4K7	A0A151WL90	Lysine-specific demethylase 5A.	Histone lysine demethylase PHF8.	0.584
ALC60_08064	ALC60_04460	A0A151WYK4	A0A151X8A2	Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase; Belongs to the ROX family.	Lysine-specific demethylase 8.	0.426
ALC60_08128	ALC60_04460	A0A151WXX1	A0A151X8A2	JmjC domain-containing histone demethylation protein 1.	Lysine-specific demethylase 8.	0.440
ALC60_08128	ALC60_05734	A0A151WXX1	A0A151X4K7	JmjC domain-containing histone demethylation protein 1.	Lysine-specific demethylase 5A.	0.690
ALC60_08128	ALC60_08225	A0A151WXX1	A0A151WXY9	JmjC domain-containing histone demethylation protein 1.	Lysine-specific histone demethylase 1A.	0.576
ALC60_08128	ALC60_08229	A0A151WXX1	A0A151WY49	JmjC domain-containing histone demethylation protein 1.	Lysine-specific histone demethylase 1A.	0.576