STRINGSTRING
ALC60_12234 ALC60_12234 ALC60_06351 ALC60_06351 ALC60_06237 ALC60_06237 ALC60_06442 ALC60_06442 ALC60_06659 ALC60_06659 ALC60_06818 ALC60_06818 ALC60_06699 ALC60_06699 ALC60_06857 ALC60_06857 ALC60_06728 ALC60_06728 ALC60_06802 ALC60_06802 ALC60_07301 ALC60_07301 ALC60_07184 ALC60_07184 ALC60_07421 ALC60_07421 ALC60_07455 ALC60_07455 ALC60_07499 ALC60_07499 ALC60_07572 ALC60_07572 ALC60_07623 ALC60_07623 ALC60_07825 ALC60_07825 ALC60_07677 ALC60_07677 ALC60_07753 ALC60_07753 ALC60_07740 ALC60_07740 ALC60_07690 ALC60_07690 ALC60_08255 ALC60_08255 ALC60_08286 ALC60_08286 ALC60_08379 ALC60_08379 ALC60_08551 ALC60_08551 ALC60_08572 ALC60_08572 LSM4 LSM4 ALC60_08588 ALC60_08588 ALC60_08679 ALC60_08679 ALC60_08747 ALC60_08747 ALC60_08967 ALC60_08967 ALC60_09072 ALC60_09072 ALC60_09082 ALC60_09082 ALC60_08974 ALC60_08974 ALC60_08981 ALC60_08981 ALC60_09349 ALC60_09349 ALC60_09346 ALC60_09346 ALC60_09484 ALC60_09484 ALC60_09550 ALC60_09550 ALC60_09620 ALC60_09620 ALC60_09581 ALC60_09581 ALC60_09855 ALC60_09855 ALC60_09861 ALC60_09861 ALC60_09887 ALC60_09887 ALC60_10094 ALC60_10094 ALC60_10022 ALC60_10022 ALC60_10045 ALC60_10045 ALC60_10212 ALC60_10212 ALC60_10301 ALC60_10301 ALC60_10356 ALC60_10356 ALC60_10384 ALC60_10384 ALC60_10689 ALC60_10689 ALC60_10776 ALC60_10776 ALC60_10989 ALC60_10989 ALC60_10983 ALC60_10983 ALC60_10958 ALC60_10958 ALC60_10986 ALC60_10986 ALC60_10950 ALC60_10950 ALC60_11131 ALC60_11131 ALC60_11232 ALC60_11232 ALC60_11305 ALC60_11305 ALC60_11677 ALC60_11677 ALC60_11714 ALC60_11714 ALC60_11816 ALC60_11816 LSM8 LSM8 ALC60_12079 ALC60_12079 ALC60_12222 ALC60_12222 ALC60_12638 ALC60_12638 ALC60_12618 ALC60_12618 ALC60_12622 ALC60_12622 ALC60_12617 ALC60_12617 ALC60_12754 ALC60_12754 ALC60_12826 ALC60_12826 ALC60_13134 ALC60_13134 ALC60_13203 ALC60_13203 ALC60_13371 ALC60_13371 ALC60_13390 ALC60_13390 ALC60_13341 ALC60_13341 ALC60_13586 ALC60_13586 ALC60_13324 ALC60_13324 ALC60_13587 ALC60_13587 ALC60_13527 ALC60_13527 ALC60_13605 ALC60_13605 LSM5 LSM5 ALC60_13823 ALC60_13823 ALC60_13812 ALC60_13812 ALC60_13835 ALC60_13835 ALC60_13942 ALC60_13942 ALC60_14005 ALC60_14005 ALC60_14150 ALC60_14150 ALC60_14141 ALC60_14141 ALC60_14275 ALC60_14275 ALC60_14232 ALC60_14232 ALC60_14401 ALC60_14401 ALC60_14789 ALC60_14789 ALC60_14810 ALC60_14810 ALC60_14740 ALC60_14740 ALC60_14825 ALC60_14825 ALC60_14830 ALC60_14830 ALC60_06231 ALC60_06231 ALC60_05908 ALC60_05908 ALC60_05886 ALC60_05886 ALC60_05896 ALC60_05896 ALC60_05693 ALC60_05693 ALC60_05905 ALC60_05905 ALC60_05746 ALC60_05746 ALC60_05929 ALC60_05929 ALC60_05528 ALC60_05528 ALC60_05403 ALC60_05403 ALC60_05526 ALC60_05526 ALC60_05423 ALC60_05423 ALC60_05124 ALC60_05124 ALC60_05306 ALC60_05306 ALC60_05123 ALC60_05123 ALC60_05119 ALC60_05119 ALC60_05019 ALC60_05019 ALC60_05028 ALC60_05028 ALC60_04965 ALC60_04965 ALC60_04997 ALC60_04997 ALC60_04878 ALC60_04878 ALC60_04557 ALC60_04557 ALC60_04481 ALC60_04481 ALC60_04309 ALC60_04309 ALC60_03973 ALC60_03973 ALC60_03931 ALC60_03931 ALC60_03843 ALC60_03843 ALC60_03859 ALC60_03859 ALC60_03766 ALC60_03766 ALC60_03652 ALC60_03652 ALC60_03675 ALC60_03675 ALC60_03415 ALC60_03415 ALC60_03488 ALC60_03488 ALC60_03532 ALC60_03532 ALC60_03326 ALC60_03326 ALC60_03270 ALC60_03270 ALC60_03187 ALC60_03187 ALC60_03183 ALC60_03183 ALC60_02937 ALC60_02937 ALC60_03004 ALC60_03004 ALC60_02947 ALC60_02947 ALC60_03016 ALC60_03016 ALC60_03084 ALC60_03084 ALC60_02610 ALC60_02610 ALC60_02692 ALC60_02692 ALC60_02722 ALC60_02722 ALC60_02563 ALC60_02563 ALC60_02229 ALC60_02229 ALC60_02274 ALC60_02274 ALC60_02291 ALC60_02291 ALC60_02322 ALC60_02322 ALC60_02368 ALC60_02368 ALC60_02099 ALC60_02099 ALC60_02105 ALC60_02105 ALC60_01901 ALC60_01901 ALC60_01810 ALC60_01810 ALC60_01803 ALC60_01803 ALC60_01764 ALC60_01764 ALC60_01591 ALC60_01591 ALC60_01271 ALC60_01271 ALC60_01370 ALC60_01370 ALC60_00634 ALC60_00634 ALC60_00820 ALC60_00820 LSM3 LSM3 ALC60_00815 ALC60_00815 ALC60_00708 ALC60_00708 ALC60_00397 ALC60_00397 ALC60_00490 ALC60_00490
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALC60_12234ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family. (766 aa)
ALC60_06351RNA-binding protein Rsf1. (197 aa)
ALC60_06237U6 snRNA-associated Sm-like protein LSm6. (106 aa)
ALC60_06442Leucine-rich repeat-containing protein 51. (200 aa)
ALC60_06659UHRF1-binding protein 1-like protein. (1350 aa)
ALC60_06818BTB/POZ domain-containing protein 9. (510 aa)
ALC60_06699Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (587 aa)
ALC60_06857LSM domain-containing protein 1-A. (115 aa)
ALC60_06728Uncharacterized protein. (249 aa)
ALC60_06802Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
ALC60_07301Pre-mRNA-processing factor 6. (931 aa)
ALC60_07184Serine/arginine-rich splicing factor 2. (188 aa)
ALC60_07421Zinc finger CCCH domain-containing protein 13. (1391 aa)
ALC60_07455Heterogeneous nuclear ribonucleoprotein K. (407 aa)
ALC60_07499RNA-binding protein 5. (941 aa)
ALC60_07572Protein BUD31 like protein. (144 aa)
ALC60_07623Putative ATP-dependent RNA helicase DDX5. (1236 aa)
ALC60_07825SRA stem-loop-interacting RNA-binding protein, mitochondrial. (89 aa)
ALC60_07677Calcium homeostasis endoplasmic reticulum protein. (773 aa)
ALC60_07753Putative ATP-dependent RNA helicase DDX46. (862 aa)
ALC60_07740Pre-mRNA-splicing factor Syf2. (230 aa)
ALC60_07690THO complex subunit 1. (652 aa)
ALC60_08255Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (225 aa)
ALC60_08286Microtubule-associated protein RP/EB family member 1. (324 aa)
ALC60_08379La-related protein 7. (835 aa)
ALC60_08551Putative ATP-dependent RNA helicase DHX35. (970 aa)
ALC60_08572Protein germ cell-less. (480 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
ALC60_08588ATP-dependent RNA helicase WM6. (477 aa)
ALC60_08679Splicing factor 3B subunit 1. (1372 aa)
ALC60_08747Heat shock 70 kDa protein cognate 4; Belongs to the heat shock protein 70 family. (644 aa)
ALC60_08967Pre-mRNA-splicing factor ISY1 like protein. (234 aa)
ALC60_09072Uncharacterized protein. (2789 aa)
ALC60_09082U4/U6.U5 tri-snRNP-associated protein 1. (743 aa)
ALC60_08974Heterogeneous nuclear ribonucleoprotein A1, A2/B1 like protein. (328 aa)
ALC60_08981U4/U6 small nuclear ribonucleoprotein Prp31. (489 aa)
ALC60_09349U2 small nuclear ribonucleoprotein B. (231 aa)
ALC60_09346Splicing factor 45. (384 aa)
ALC60_09484Uncharacterized protein. (131 aa)
ALC60_09550Peptidyl-prolyl cis-trans isomerase-like 1. (310 aa)
ALC60_09620Splicing factor U2af 38 kDa subunit. (240 aa)
ALC60_09581Uncharacterized protein. (642 aa)
ALC60_09855PHD finger-like domain-containing protein 5A. (110 aa)
ALC60_09861Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (689 aa)
ALC60_09887BTB/POZ domain-containing protein 9. (606 aa)
ALC60_10094Heterogeneous nuclear ribonucleoprotein C-like 1. (61 aa)
ALC60_10022Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
ALC60_10045Pre-mRNA-splicing factor 38B. (399 aa)
ALC60_10212Cell division cycle 5-related protein. (787 aa)
ALC60_10301Serine/arginine-rich splicing factor 7. (209 aa)
ALC60_10356U1 small nuclear ribonucleoprotein 70 kDa. (405 aa)
ALC60_10384Transcriptional adapter 1. (317 aa)
ALC60_10689Small nuclear ribonucleoprotein G. (64 aa)
ALC60_10776Tr-type G domain-containing protein. (981 aa)
ALC60_10989Eukaryotic initiation factor 4A-III. (398 aa)
ALC60_10983Pre-mRNA-splicing factor SPF27. (244 aa)
ALC60_10958Poly(U)-binding-splicing factor half pint. (574 aa)
ALC60_10986Splicing factor 3B subunit 2. (744 aa)
ALC60_10950U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein. (201 aa)
ALC60_11131Uncharacterized protein. (631 aa)
ALC60_11232Splicing factor U2AF 50 kDa subunit. (682 aa)
ALC60_11305Transformer-2 sex-determining protein. (358 aa)
ALC60_11677Angiogenic factor with G patch and FHA domains 1. (543 aa)
ALC60_11714RNA-binding protein 40. (332 aa)
ALC60_11816Uncharacterized protein. (294 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (85 aa)
ALC60_12079RNA-binding protein 25. (599 aa)
ALC60_12222Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (890 aa)
ALC60_12638RRM domain-containing protein. (261 aa)
ALC60_12618Nucleolysin TIA-1 isoform p40. (377 aa)
ALC60_12622Uncharacterized protein. (440 aa)
ALC60_12617U4/U6 small nuclear ribonucleoprotein Prp3. (1337 aa)
ALC60_12754Protein CWC15 like protein A. (225 aa)
ALC60_12826Uncharacterized protein. (161 aa)
ALC60_13134Nuclear cap-binding protein subunit 1. (789 aa)
ALC60_13203Splicing factor 3B subunit 3. (1217 aa)
ALC60_13371Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family. (776 aa)
ALC60_13390LYR motif-containing protein 7. (115 aa)
ALC60_13341SAFB-like transcription modulator. (878 aa)
ALC60_13586C2H2-type domain-containing protein. (277 aa)
ALC60_13324Pre-mRNA-splicing factor 18. (345 aa)
ALC60_13587Heterogeneous nuclear ribonucleoprotein C. (66 aa)
ALC60_13527Polymerase delta-interacting protein 3. (464 aa)
ALC60_13605Splicing factor 3A subunit 2. (274 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (86 aa)
ALC60_13823Survival of motor neuron-related-splicing factor 30. (235 aa)
ALC60_13812Uncharacterized protein. (805 aa)
ALC60_13835Uncharacterized protein. (298 aa)
ALC60_13942Zinc finger matrin-type protein 2. (197 aa)
ALC60_14005Pre-mRNA-splicing factor RBM22. (415 aa)
ALC60_14150Uncharacterized protein. (430 aa)
ALC60_14141Transcription elongation regulator 1. (1252 aa)
ALC60_14275Pre-mRNA branch site p14-like protein. (125 aa)
ALC60_14232Puff-specific protein Bx42. (545 aa)
ALC60_14401RNA-binding protein 14. (392 aa)
ALC60_14789Pre-mRNA-splicing factor SLU7. (572 aa)
ALC60_14810SDP_N domain-containing protein. (298 aa)
ALC60_14740Serine/arginine-rich splicing factor 1. (248 aa)
ALC60_14825Small nuclear ribonucleoprotein Sm D2. (102 aa)
ALC60_14830U6 snRNA-associated Sm-like protein LSm7. (117 aa)
ALC60_06231Polyglutamine-binding protein 1. (298 aa)
ALC60_05908HSac2 domain-containing protein. (538 aa)
ALC60_05886U4/U6 small nuclear ribonucleoprotein Prp4. (523 aa)
ALC60_05896ELAV-like protein 2. (459 aa)
ALC60_05693Ankyrin repeat domain-containing protein 50. (1218 aa)
ALC60_05905ATP-dependent RNA helicase DHX8. (1203 aa)
ALC60_05746Uncharacterized protein. (2077 aa)
ALC60_05929U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (141 aa)
ALC60_05528RNA-binding protein 38. (412 aa)
ALC60_05403Pre-mRNA-splicing factor SYF1. (839 aa)
ALC60_05526Uncharacterized protein. (396 aa)
ALC60_05423U4/U6.U5 tri-snRNP-associated protein 2. (507 aa)
ALC60_05124Chitin-binding type-2 domain-containing protein. (186 aa)
ALC60_05306Intron-binding protein aquarius. (1419 aa)
ALC60_05123Uncharacterized protein. (800 aa)
ALC60_05119RNA and export factor-binding protein 2. (253 aa)
ALC60_05019Protein lingerer. (1189 aa)
ALC60_05028Pre-mRNA-processing-splicing factor 8. (2372 aa)
ALC60_04965ATP-dependent RNA helicase DBP3. (730 aa)
ALC60_04997Splicing factor U2af 38 kDa subunit. (240 aa)
ALC60_04878RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (157 aa)
ALC60_04557Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (242 aa)
ALC60_04481WW domain-binding protein 11. (548 aa)
ALC60_04309Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (97 aa)
ALC60_03973Pre-mRNA-splicing factor 38A. (307 aa)
ALC60_03931Splicing factor 3B subunit 4. (405 aa)
ALC60_03843Beta-catenin-like protein 1. (577 aa)
ALC60_03859Serine-arginine protein 55. (550 aa)
ALC60_03766Putative U2 small nuclear ribonucleoprotein A. (246 aa)
ALC60_03652CS domain-containing protein. (163 aa)
ALC60_03675CDK5RAP1-like protein. (1418 aa)
ALC60_03415Protein TAPT1 like protein. (561 aa)
ALC60_03488Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1132 aa)
ALC60_03532Protein mago nashi. (146 aa)
ALC60_03326Small nuclear ribonucleoprotein Sm D3. (142 aa)
ALC60_03270U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1. (464 aa)
ALC60_03187THO complex subunit 3. (322 aa)
ALC60_03183Pre-mRNA-processing factor 19. (367 aa)
ALC60_02937Peroxisome proliferator-activated receptor gamma coactivator-related protein 1. (877 aa)
ALC60_03004U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
ALC60_02947WD repeat-containing protein 69. (442 aa)
ALC60_03016Pre-mRNA-processing factor 17. (565 aa)
ALC60_03084Splicing factor 3A subunit 1. (767 aa)
ALC60_02610Coiled-coil domain-containing protein 12. (146 aa)
ALC60_02692Uncharacterized protein. (1018 aa)
ALC60_02722Heat shock cognate 70 kDa protein. (248 aa)
ALC60_02563Nucleolysin TIAR. (393 aa)
ALC60_02229Apoptotic chromatin condensation inducer in the nucleus. (840 aa)
ALC60_02274Zinc finger matrin-type protein 5. (166 aa)
ALC60_02291Uncharacterized protein. (1217 aa)
ALC60_02322Small nuclear ribonucleoprotein-associated protein. (250 aa)
ALC60_02368Lethal(3)malignant brain tumor-like protein 3. (1405 aa)
ALC60_02099Pleiotropic regulator 1. (434 aa)
ALC60_02105Zinc transporter 7. (388 aa)
ALC60_01901U5 small nuclear ribonucleoprotein 40 kDa protein. (349 aa)
ALC60_01810Uncharacterized protein. (261 aa)
ALC60_01803Uncharacterized protein. (220 aa)
ALC60_01764WW domain-containing adapter protein with coiled-coil. (646 aa)
ALC60_01591Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (1038 aa)
ALC60_01271RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (157 aa)
ALC60_01370TATA-binding protein-associated factor 2N. (442 aa)
ALC60_00634RNA-binding protein 1. (292 aa)
ALC60_00820Uncharacterized protein. (235 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (67 aa)
ALC60_00815Protein crooked neck. (643 aa)
ALC60_00708Myelin expression factor 2. (650 aa)
ALC60_00397THO complex subunit 2. (1425 aa)
ALC60_00490Putative ATP-dependent RNA helicase Dbp73D; Belongs to the DEAD box helicase family. (659 aa)
Your Current Organism:
Trachymyrmex zeteki
NCBI taxonomy Id: 64791
Other names: T. zeteki
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