STRINGSTRING
Trad_0574 Trad_0574 Trad_0669 Trad_0669 Trad_1870 Trad_1870 Trad_2360 Trad_2360 Trad_2949 Trad_2949
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Trad_0574AMP-dependent synthetase and ligase; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR020845:IPR000873; KEGG: dol:Dole_3006 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A8ZZ36 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme. (596 aa)
Trad_0669COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845:IPR000873; KEGG: hau:Haur_4238 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: A9AXF0 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme. (521 aa)
Trad_1870Alpha/beta hydrolase fold protein; COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: sal:Sala_0197 acylglycerol lipase; PFAM: alpha/beta hydrolase fold; SPTR: Q1GWQ1 Acylglycerol lipase; PFAM: Putative lysophospholipase. (282 aa)
Trad_2360AMP-dependent synthetase and ligase; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873:IPR020845; KEGG: tth:TTC0079 long-chain-fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: C1XUM0 AMP-forming long-chain acyl-CoA synthetase; PFAM: AMP-binding enzyme. (656 aa)
Trad_2949AMP-dependent synthetase and ligase; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR020459:IPR020845:IPR000873; KEGG: rmr:Rmar_1708 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: D0MJD6 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme. (642 aa)
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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