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Trad_0704 Trad_0704 Trad_1004 Trad_1004 Trad_1005 Trad_1005 Trad_1021 Trad_1021 Trad_1022 Trad_1022 Trad_1023 Trad_1023 Trad_1024 Trad_1024 Trad_1025 Trad_1025 Trad_1026 Trad_1026 Trad_1027 Trad_1027 Trad_1495 Trad_1495 Trad_1496 Trad_1496 Trad_1722 Trad_1722 Trad_2260 Trad_2260 Trad_2536 Trad_2536 Trad_2634 Trad_2634 Trad_2776 Trad_2776 Trad_2777 Trad_2777 Trad_2778 Trad_2778 ctaB ctaB Trad_2780 Trad_2780 acpP acpP Trad_2802 Trad_2802 Trad_2803 Trad_2803 Trad_2804 Trad_2804 Trad_2805 Trad_2805 Trad_2806 Trad_2806 Trad_2826 Trad_2826 Trad_2827 Trad_2827 nuoN nuoN Trad_2975 Trad_2975 Trad_2976 Trad_2976 nuoK nuoK Trad_2978 Trad_2978 nuoI nuoI nuoH nuoH Trad_2981 Trad_2981 Trad_2982 Trad_2982 Trad_2983 Trad_2983 nuoD nuoD nuoC nuoC nuoB nuoB Trad_2988 Trad_2988
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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co-expression
protein homology
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Trad_0704FAD dependent oxidoreductase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR017941:IPR006076:IPR005805; KEGG: dba:Dbac_1184 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; SPTR: C7LRE2 FAD dependent oxidoreductase; PFAM: Rieske [2Fe-2S] domain; FAD dependent oxidoreductase. (508 aa)
Trad_1004Peptidase M16 domain protein; COGs: COG0612 Zn-dependent peptidase; InterPro IPR011237:IPR011249:IPR011765:IPR007863; KEGG: ttj:TTHA1265 zinc-dependent peptidase; PFAM: peptidase M16 domain protein; SPTR: C1XID7 Predicted Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16). (423 aa)
Trad_1005Peptidase M16 domain protein; COGs: COG0612 Zn-dependent peptidase; InterProIPR011237:IPR011249:IPR001431:IPR011765:IPR 007863; KEGG: tth:TTC0900 zinc protease; PFAM: peptidase M16 domain protein; SPTR: C1XID8 Predicted Zn-dependent peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); Belongs to the peptidase M16 family. (407 aa)
Trad_1021Cytochrome c class I; InterPro IPR009056:IPR003088; KEGG: ttj:TTHA1423 cytochrome c-552 precursor; PFAM: cytochrome c class I; SPTR: Q1J072 Cytochrome c, class I; PFAM: Cytochrome c. (431 aa)
Trad_1022KEGG: sus:Acid_0494 hypothetical protein; SPTR: Q02BR2 Putative uncharacterized protein. (393 aa)
Trad_1023Conserved hypothetical protein; InterPro IPR009056; KEGG: aba:Acid345_3000 hypothetical protein; SPTR: B9XE55 Putative uncharacterized protein; PFAM: Cytochrome c. (211 aa)
Trad_1024KEGG: rrs:RoseRS_4142 hypothetical protein; SPTR: A5V0T3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3341). (186 aa)
Trad_1025COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: cag:Cagg_3385 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: B8G8V4 Polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD. (474 aa)
Trad_1026Molybdopterin oxidoreductase, iron-sulfur binding subunit; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR006311:IPR017896:IPR009010; KEGG: noc:Noc_1238 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Q3JBQ7 Molybdopterin oxidoreductase, iron-sulfur binding subunit. (1010 aa)
Trad_1027Conserved hypothetical protein; InterPro IPR000095:IPR011031; KEGG: rrs:RoseRS_4139 hypothetical protein; SPTR: A5V0T0 Putative uncharacterized protein; PFAM: Class III cytochrome C family. (217 aa)
Trad_1495COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR002429:IPR009056:IPR003088:IPR008972; KEGG: rmr:Rmar_1565 cytochrome c oxidase subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; SPTR: D0MIZ4 Cytochrome c oxidase subunit II; PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome c. (343 aa)
Trad_1496COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: ttj:TTHA1135 ba3-type cytochrome c oxidase polypeptide I; PFAM: cytochrome c oxidase subunit I; SPTR: Q72JK2 Subunit II of C(O/B)3-type cytochrome c oxidase; PFAM: Cytochrome C and Quinol oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family. (559 aa)
Trad_1722KEGG: ttj:TTHB091 hypothetical protein; SPTR: C1XIF8 Lysophospholipase. (486 aa)
Trad_2260COGs: COG0232 dGTP triphosphohydrolase; InterPro IPR003607:IPR006674:IPR006261; KEGG: tth:TTC0044 dNTP triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1XP76 Deoxyguanosinetriphosphate triphosphohydrolase, putative; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative; uncharacterized domain HDIG; Belongs to the dGTPase family. Type 2 subfamily. (382 aa)
Trad_2536Hypothetical protein; KEGG: tth:TTC0122 putative cytoplasmic protein; SPTR: Q72LD7 Hypothetical cytosolic protein; PFAM: NADH-quinone oxidoreductase chain 15. (172 aa)
Trad_2634NmrA family protein; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR008030:IPR016040; KEGG: rmr:Rmar_1606 NAD-dependent epimerase/dehydratase; PFAM: NmrA family protein; SPTR: D0MJ34 NAD-dependent epimerase/dehydratase; PFAM: Protein of unknown function (DUF2867); NmrA-like family. (499 aa)
Trad_2776COGs: COG3346 conserved hypothetical protein; InterPro IPR002994; KEGG: rca:Rcas_1199 hypothetical protein; SPTR: A7NIJ6 Putative uncharacterized protein; PFAM: SURF1 family. (272 aa)
Trad_2777COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883:IPR014241:IPR000298; KEGG: ttj:TTHA0312 cytochrome caa3 oxidase subunit I (polypeptide I + III); PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit III; SPTR: C1XWH9 Cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: Cytochrome c oxidase subunit III; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family. (903 aa)
Trad_2778Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (383 aa)
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (298 aa)
Trad_2780Cytochrome oxidase assembly; COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; InterPro IPR003780; KEGG: mxa:MXAN_0602 cytochrome oxidase assembly protein; PFAM: cytochrome oxidase assembly; SPTR: Q1DEQ3 Cytochrome oxidase assembly protein; PFAM: Cytochrome oxidase assembly protein. (334 aa)
acpPAcyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (79 aa)
Trad_2802Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (354 aa)
Trad_2803Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (655 aa)
Trad_2804COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: sti:Sthe_1584 cytochrome c oxidase subunit III; PFAM: cytochrome c oxidase subunit III; SPTR: D1C451 Cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase subunit III. (203 aa)
Trad_2805Cytochrome c class I; InterPro IPR009056:IPR003088; KEGG: dge:Dgeo_0810 cytochrome c, class I; PFAM: cytochrome c class I; SPTR: C1XTX3 Cytochrome c553; PFAM: Cytochrome c. (464 aa)
Trad_2806COGs: COG3336 membrane protein; InterPro IPR019108; KEGG: ote:Oter_2068 membrane protein-like protein; PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; SPTR: C0AF21 Membrane protein-like protein; PFAM: Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG); TIGRFAM: cytochrome c oxidase assembly factor CtaG. (266 aa)
Trad_2826COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: dra:DR_0299 deoxyguanosine kinase/deoxyadenosine kinase subunit; PFAM: deoxynucleoside kinase; SPTR: B7A800 Deoxynucleoside kinase; PFAM: Deoxynucleoside kinase. (209 aa)
Trad_2827COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: dra:DR_0298 deoxyguanosine kinase/deoxyadenosine kinase subunit; PFAM: deoxynucleoside kinase; SPTR: B7A801 Deoxynucleoside kinase; PFAM: Deoxynucleoside kinase. (210 aa)
nuoNProton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (487 aa)
Trad_2975Proton-translocating NADH-quinone oxidoreductase, chain M; COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR003918:IPR010227:IPR001750; KEGG: tth:TTC1908 NADH-quinone oxidoreductase chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: Q72GE0 NADH-quinone oxidoreductase chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M. (495 aa)
Trad_2976Proton-translocating NADH-quinone oxidoreductase, chain L; COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterProIPR003916:IPR018393:IPR003945:IPR001516:IPR 001750; KEGG: tth:TTC1909 NADH-quinone oxidoreductase chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: Q72GD9 NADH-quinone oxidoreductase chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ub [...] (647 aa)
nuoKNADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (110 aa)
Trad_2978NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (184 aa)
nuoINADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (174 aa)
nuoHRespiratory-chain NADH dehydrogenase subunit 1; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (342 aa)
Trad_2981NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (824 aa)
Trad_2982NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (447 aa)
Trad_2983COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023:IPR012335:IPR012336; KEGG: dge:Dgeo_0913 NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: A4U8S3 NuoF+E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit. (191 aa)
nuoDNADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (409 aa)
nuoCNADH (or F420H2) dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (216 aa)
nuoBNADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (178 aa)
Trad_2988NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. (115 aa)
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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