STRINGSTRING
Trad_1556 Trad_1556 Trad_1557 Trad_1557 Trad_1558 Trad_1558 Trad_1559 Trad_1559 Trad_1560 Trad_1560
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Trad_1556Glycine C-acetyltransferase; COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR001917:IPR004839:IPR015421:IPR015424; KEGG: tye:THEYE_A0594 serine hydroxymethyltransferase; PFAM: aminotransferase class I and II; PRIAM: Glycine C-acetyltransferase; SPTR: B5YJM2 Serine hydroxymethyltransferase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase. (441 aa)
Trad_1557Conserved hypothetical protein; InterPro IPR016181:IPR000182; KEGG: mxa:MXAN_3747 hypothetical protein; SPTR: Q1D5Z4 Putative uncharacterized protein. (367 aa)
Trad_1558Abortive infection protein; InterPro IPR003675; KEGG: scl:sce5305 hypothetical protein; PFAM: Abortive infection protein; SPTR: A1ZUR8 Caax amino terminal protease family; PFAM: CAAX amino terminal protease family. (242 aa)
Trad_1559NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: sco:SCO5893 oxidoreductase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: O54156 Oxidoreductase; PFAM: NAD dependent epimerase/dehydratase family. (334 aa)
Trad_1560Glycosyltransferase 28 domain protein; COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR007235; KEGG: rca:Rcas_2994 monogalactosyldiacylglycerol synthase; PFAM: Glycosyltransferase 28 domain; SPTR: A7NNB8 Monogalactosyldiacylglycerol synthase; PFAM: Glycosyltransferase family 28 C-terminal domain. (383 aa)
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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