STRINGSTRING
Trad_0109 Trad_0109 Trad_0110 Trad_0110 Trad_0111 Trad_0111 Trad_0112 Trad_0112 Trad_0113 Trad_0113 Trad_0114 Trad_0114 Trad_0345 Trad_0345 Trad_0670 Trad_0670 Trad_0671 Trad_0671 Trad_1151 Trad_1151 Trad_1152 Trad_1152 Trad_1153 Trad_1153 Trad_1154 Trad_1154 Trad_1155 Trad_1155 hmuV hmuV Trad_1157 Trad_1157 Trad_1158 Trad_1158 Trad_1159 Trad_1159 Trad_1160 Trad_1160 Trad_1161 Trad_1161 Trad_1162 Trad_1162 Trad_1163 Trad_1163 Trad_1164 Trad_1164 Trad_2232 Trad_2232 Trad_2233 Trad_2233
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Trad_0109KEGG: SORBIDRAFT_02g000410; hypothetical protein; SPTR: C4RIM3 Phosphoribosyltransferase. (116 aa)
Trad_0110Periplasmic binding protein; COGs: COG4558 ABC-type hemin transport system periplasmic component; InterPro IPR002491; KEGG: ttj:TTHB220 hemin ABC transporter, periplasmic hemin-binding protein; PFAM: periplasmic binding protein; SPTR: C1XQC8 ABC-type hemin transport system, periplasmic component; PFAM: Periplasmic binding protein. (313 aa)
Trad_0111Periplasmic binding protein; COGs: COG4558 ABC-type hemin transport system periplasmic component; InterPro IPR002491; KEGG: ttj:TTHB220 hemin ABC transporter, periplasmic hemin-binding protein; PFAM: periplasmic binding protein; SPTR: C1XQC8 ABC-type hemin transport system, periplasmic component; PFAM: Periplasmic binding protein. (299 aa)
Trad_0112COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: tth:TT_P0178 hemin transport system permease protein HmuU; PFAM: transport system permease protein; SPTR: C1XW08 ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (343 aa)
Trad_0113ABC transporter related protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593:IPR017871; KEGG: tth:TT_P0177 transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B7AB93 ABC transporter related; PFAM: ABC transporter. (269 aa)
Trad_0114InterPro IPR007138:IPR011008; KEGG: dge:Dgeo_2196 antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: A7BZR6 Antibiotic biosynthesis monooxygenase; PFAM: Antibiotic biosynthesis monooxygenase. (197 aa)
Trad_0345ABC transporter related protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR017871:IPR003439:IPR003593; KEGG: bbe:BBR47_56970 probable ABC transporter ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C0Z8P7 Probable ABC transporter ATP binding protein; PFAM: ABC transporter. (269 aa)
Trad_0670Hypothetical protein; InterPro IPR002491; KEGG: dge:Dgeo_2363 periplasmic binding protein; SPTR: Q1J3Y0 ABC-type Fe3+-hydroxamate transport system, periplasmic component. (79 aa)
Trad_0671COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: dge:Dgeo_0024 transport system permease protein; PFAM: transport system permease protein; SPTR: Q1J2F6 ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (348 aa)
Trad_1151COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: gym:GYMC10_3810 transport system permease protein; PFAM: transport system permease protein; SPTR: B1I066 Putative uncharacterized protein; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (363 aa)
Trad_1152COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: gym:GYMC10_3811 transport system permease protein; PFAM: transport system permease protein; SPTR: C0ZJ94 Probable ABC transporter permease protein; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (344 aa)
Trad_1153Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: rxy:Rxyl_0413 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Q1AYZ1 Periplasmic binding protein; PFAM: Periplasmic binding protein. (315 aa)
Trad_1154KEGG: chl:Chy400_0341 hypothetical protein; SPTR: C1XHQ4 Putative uncharacterized protein. (118 aa)
Trad_1155Protein of unknown function DUF2470; COGs: COG0748 Putative heme iron utilization protein; InterProIPR014599:IPR012349:IPR009002:IPR011576:IPR 019595; KEGG: scl:sce4194 hypothetical protein; PFAM: Protein of unknown function DUF2470; pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: A9EWW3 Specificity unclear; PFAM: Pyridoxamine 5'-phosphate oxidase; Protein of unknown function (DUF2470). (262 aa)
hmuVABC transporter related protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system. (298 aa)
Trad_1157COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: gvi:gll0579 hemin ABC transporter permease protein; PFAM: transport system permease protein; SPTR: Q7NN35 Hemin ABC transporter permease protein; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (360 aa)
Trad_1158Periplasmic binding protein; COGs: COG4558 ABC-type hemin transport system periplasmic component; InterPro IPR002491; KEGG: dge:Dgeo_2195 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Q1IW95 Periplasmic binding protein; PFAM: Periplasmic binding protein. (308 aa)
Trad_1159Hypothetical protein. (37 aa)
Trad_1160Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: cgt:cgR_2963 hypothetical protein; PFAM: periplasmic binding protein; SPTR: A4QIC0 Putative uncharacterized protein; PFAM: Periplasmic binding protein. (312 aa)
Trad_1161KEGG: amr:AM1_A0270 hypothetical protein; SPTR: A8ZKS0 Putative uncharacterized protein. (71 aa)
Trad_1162Nitroreductase; InterPro IPR000415; KEGG: rxy:Rxyl_1291 nitroreductase; PFAM: nitroreductase; SPTR: A4BLG5 Nitroreductase; PFAM: Nitroreductase family. (202 aa)
Trad_1163Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: sro:Sros_3470 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: C1WJU6 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein. (333 aa)
Trad_1164Sucraseferredoxin family protein; COGs: COG4759 Uncharacterized protein containing thioredoxin-like domain; InterPro IPR010350:IPR012336:IPR009737; KEGG: ana:all2608 hypothetical protein; PFAM: Sucraseferredoxin family protein; SPTR: Q8YTV5 All2608 protein; PFAM: Sucrase/ferredoxin-like. (346 aa)
Trad_2232Conserved hypothetical protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: dra:DR_0462 hypothetical protein; SPTR: Q9RX53 Putative uncharacterized protein; PFAM: Periplasmic binding protein. (309 aa)
Trad_2233Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: ddr:Deide_12970 putative iron siderophore/cobalamin (vitamine B12) ABC transporter, periplasmic component; PFAM: periplasmic binding protein; SPTR: C1XX90 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein. (262 aa)
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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