STRINGSTRING
Trad_0345 Trad_0345 Trad_1151 Trad_1151 Trad_1152 Trad_1152 Trad_1153 Trad_1153 Trad_1160 Trad_1160
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Trad_0345ABC transporter related protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR017871:IPR003439:IPR003593; KEGG: bbe:BBR47_56970 probable ABC transporter ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C0Z8P7 Probable ABC transporter ATP binding protein; PFAM: ABC transporter. (269 aa)
Trad_1151COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: gym:GYMC10_3810 transport system permease protein; PFAM: transport system permease protein; SPTR: B1I066 Putative uncharacterized protein; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (363 aa)
Trad_1152COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: gym:GYMC10_3811 transport system permease protein; PFAM: transport system permease protein; SPTR: C0ZJ94 Probable ABC transporter permease protein; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (344 aa)
Trad_1153Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: rxy:Rxyl_0413 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Q1AYZ1 Periplasmic binding protein; PFAM: Periplasmic binding protein. (315 aa)
Trad_1160Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: cgt:cgR_2963 hypothetical protein; PFAM: periplasmic binding protein; SPTR: A4QIC0 Putative uncharacterized protein; PFAM: Periplasmic binding protein. (312 aa)
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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