STRINGSTRING
Trad_2937 Trad_2937 Trad_0221 Trad_0221 Trad_0880 Trad_0880 Trad_1097 Trad_1097 Trad_1330 Trad_1330 Trad_1401 Trad_1401 Trad_1960 Trad_1960 pfkA pfkA Trad_2662 Trad_2662 Trad_2914 Trad_2914 grpE grpE minE minE Trad_0121 Trad_0121
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Trad_2937DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (552 aa)
Trad_0221COGs: COG0408 Coproporphyrinogen III oxidase; InterPro IPR001260:IPR018375; KEGG: cag:Cagg_1294 coproporphyrinogen oxidase; PFAM: coproporphyrinogen III oxidase; PRIAM: Coproporphyrinogen oxidase; SPTR: B8G823 Coproporphyrinogen oxidase; PFAM: Coproporphyrinogen III oxidase. (330 aa)
Trad_0880Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake. (223 aa)
Trad_1097COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR004632:IPR015421:IPR015424:IPR005814; KEGG: tmz:Tmz1t_0429 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; SPTR: C1XPP3 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (438 aa)
Trad_1330Type II and III secretion system protein; COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR004845:IPR005644:IPR004846:IPR001775; KEGG: tth:TTC1017 competence protein PilQ; PFAM: type II and III secretion system protein; NolW domain protein; SPTR: C1XGT1 Type II secretory pathway, component PulD; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein. (560 aa)
Trad_1401COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814:IPR004636:IPR015421:IPR015424; KEGG: ttj:TTHA1755 acetylornithine/acetyl-lysine aminotransferase; PFAM: aminotransferase class-III; SPTR: B7A5Y2 Acetylornithine and succinylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases. (401 aa)
Trad_1960COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR015424:IPR015421:IPR005814; KEGG: sus:Acid_7662 aminotransferase; PFAM: aminotransferase class-III; SPTR: Q01P59 Aminotransferase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (435 aa)
pfkA6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (322 aa)
Trad_2662DivIVA domain protein; InterPro IPR007793:IPR019933; KEGG: tth:TTC0196 hypothetical protein; PFAM: DivIVA family protein; SPTR: Q72L67 Hypothetical conserved protein; TIGRFAM: DivIVA domain; PFAM: DivIVA protein; TIGRFAM: DivIVA domain. (158 aa)
Trad_2914Aminotransferase class-III; COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814:IPR015421:IPR015424; KEGG: ddr:Deide_11260 putative acetylornithine transaminase (acetylornithine aminotransferase); putative ornithine aminotransferase; PFAM: aminotransferase class-III; SPTR: C1CV13 Putative Acetylornithine transaminase (Acetylornithine aminotransferase); putative ornithine aminotransferase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (486 aa)
grpEGrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...] (234 aa)
minECell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. (79 aa)
Trad_0121COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR004632:IPR005814:IPR015424:IPR015421; KEGG: chl:Chy400_3624 aminotransferase class-III; PFAM: aminotransferase class-III; SPTR: C1XG95 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (453 aa)
Your Current Organism:
Truepera radiovictrix
NCBI taxonomy Id: 649638
Other names: T. radiovictrix DSM 17093, Truepera radiovictrix DSM 17093, Truepera radiovictrix RQ-24, Truepera radiovictrix str. DSM 17093, Truepera radiovictrix strain DSM 17093
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