(8 nodes) U5 snRNP, and Sm-like protein Lsm6/SmF network (Phanerochaete carnosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K5UQC4_PHACS	Uncharacterized protein. (922 aa)
	K5VA28_PHACS	Sm domain-containing protein. (69 aa)
	K5VGQ2_PHACS	Sm domain-containing protein. (105 aa)
	K5VYN8_PHACS	MPN domain-containing protein. (2353 aa)
	K5W615_PHACS	Small nuclear ribonucleoprotein G. (77 aa)
	K5WF98_PHACS	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (122 aa)
	K5WQC5_PHACS	Tr-type G domain-containing protein. (982 aa)
	K5X0W2_PHACS	Uncharacterized protein. (1973 aa)

Your Current Organism:

Phanerochaete carnosa

NCBI taxonomy Id: 650164
Other names: P. carnosa HHB-10118-sp, Phanerochaete carnosa HHB-10118-sp

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5UQC4_PHACS	K5VA28_PHACS	K5UQC4	K5VA28	Uncharacterized protein.	Sm domain-containing protein.	0.994
K5UQC4_PHACS	K5VGQ2_PHACS	K5UQC4	K5VGQ2	Uncharacterized protein.	Sm domain-containing protein.	0.994
K5UQC4_PHACS	K5VYN8_PHACS	K5UQC4	K5VYN8	Uncharacterized protein.	MPN domain-containing protein.	0.999
K5UQC4_PHACS	K5W615_PHACS	K5UQC4	K5W615	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.994
K5UQC4_PHACS	K5WF98_PHACS	K5UQC4	K5WF98	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.995
K5UQC4_PHACS	K5WQC5_PHACS	K5UQC4	K5WQC5	Uncharacterized protein.	Tr-type G domain-containing protein.	0.999
K5UQC4_PHACS	K5X0W2_PHACS	K5UQC4	K5X0W2	Uncharacterized protein.	Uncharacterized protein.	0.998
K5VA28_PHACS	K5UQC4_PHACS	K5VA28	K5UQC4	Sm domain-containing protein.	Uncharacterized protein.	0.994
K5VA28_PHACS	K5VGQ2_PHACS	K5VA28	K5VGQ2	Sm domain-containing protein.	Sm domain-containing protein.	0.999
K5VA28_PHACS	K5VYN8_PHACS	K5VA28	K5VYN8	Sm domain-containing protein.	MPN domain-containing protein.	0.996
K5VA28_PHACS	K5W615_PHACS	K5VA28	K5W615	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.999
K5VA28_PHACS	K5WF98_PHACS	K5VA28	K5WF98	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
K5VA28_PHACS	K5WQC5_PHACS	K5VA28	K5WQC5	Sm domain-containing protein.	Tr-type G domain-containing protein.	0.997
K5VA28_PHACS	K5X0W2_PHACS	K5VA28	K5X0W2	Sm domain-containing protein.	Uncharacterized protein.	0.996
K5VGQ2_PHACS	K5UQC4_PHACS	K5VGQ2	K5UQC4	Sm domain-containing protein.	Uncharacterized protein.	0.994
K5VGQ2_PHACS	K5VA28_PHACS	K5VGQ2	K5VA28	Sm domain-containing protein.	Sm domain-containing protein.	0.999
K5VGQ2_PHACS	K5VYN8_PHACS	K5VGQ2	K5VYN8	Sm domain-containing protein.	MPN domain-containing protein.	0.995
K5VGQ2_PHACS	K5W615_PHACS	K5VGQ2	K5W615	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.999
K5VGQ2_PHACS	K5WF98_PHACS	K5VGQ2	K5WF98	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.999
K5VGQ2_PHACS	K5WQC5_PHACS	K5VGQ2	K5WQC5	Sm domain-containing protein.	Tr-type G domain-containing protein.	0.996