37 items (Phanerochaete carnosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K5UJT3_PHACS	Uncharacterized protein. (615 aa)
	K5UYZ6_PHACS	Uncharacterized protein. (307 aa)
	K5V2E2_PHACS	Smg4_UPF3 domain-containing protein. (475 aa)
	K5V9C5_PHACS	C2H2-type domain-containing protein. (924 aa)
	K5V9H4_PHACS	Uncharacterized protein. (357 aa)
	K5VFJ2_PHACS	Uncharacterized protein. (844 aa)
	K5VH12_PHACS	RRM domain-containing protein. (165 aa)
	K5VJ07_PHACS	Uncharacterized protein. (149 aa)
	K5VRY3_PHACS	RRM domain-containing protein. (138 aa)
	K5VUD7_PHACS	Uncharacterized protein. (230 aa)
	K5VUN4_PHACS	AAA domain-containing protein. (1067 aa)
	K5VVN0_PHACS	Nuclear cap-binding protein subunit 2. (225 aa)
	K5VZC5_PHACS	Zn(2)-C6 fungal-type domain-containing protein. (676 aa)
	K5W141_PHACS	PWI domain-containing protein. (452 aa)
	K5W239_PHACS	RRM domain-containing protein. (386 aa)
	K5W2S8_PHACS	Uncharacterized protein. (606 aa)
	K5W581_PHACS	Uncharacterized protein. (1079 aa)
	K5W5Y0_PHACS	Uncharacterized protein. (251 aa)
	K5W625_PHACS	Uncharacterized protein. (226 aa)
	K5W7B5_PHACS	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (201 aa)
	K5W9E1_PHACS	Uncharacterized protein. (525 aa)
	K5W9F7_PHACS	Uncharacterized protein. (620 aa)
	K5W9U6_PHACS	Uncharacterized protein. (437 aa)
	K5WEA6_PHACS	RRM domain-containing protein. (220 aa)
	K5WG30_PHACS	RRM domain-containing protein. (234 aa)
	K5WI96_PHACS	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (575 aa)
	K5WJF5_PHACS	Uncharacterized protein; Belongs to the DEAD box helicase family. (396 aa)
	K5WN06_PHACS	Glycoside hydrolase family 16 protein. (384 aa)
	K5WNW8_PHACS	Uncharacterized protein. (288 aa)
	K5WPG6_PHACS	Uncharacterized protein. (567 aa)
	K5WPY3_PHACS	Uncharacterized protein. (146 aa)
	K5WQE4_PHACS	Uncharacterized protein. (781 aa)
	K5WSY6_PHACS	Pinin_SDK_memA domain-containing protein. (330 aa)
	K5X3W9_PHACS	RRM domain-containing protein. (224 aa)
	K5X868_PHACS	Uncharacterized protein. (239 aa)
	K5X9H4_PHACS	MIF4G domain-containing protein. (869 aa)
	K5XC65_PHACS	Uncharacterized protein. (526 aa)

Your Current Organism:

Phanerochaete carnosa

NCBI taxonomy Id: 650164
Other names: P. carnosa HHB-10118-sp, Phanerochaete carnosa HHB-10118-sp

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5UJT3_PHACS	K5UYZ6_PHACS	K5UJT3	K5UYZ6	Uncharacterized protein.	Uncharacterized protein.	0.997
K5UJT3_PHACS	K5V9C5_PHACS	K5UJT3	K5V9C5	Uncharacterized protein.	C2H2-type domain-containing protein.	0.731
K5UJT3_PHACS	K5VFJ2_PHACS	K5UJT3	K5VFJ2	Uncharacterized protein.	Uncharacterized protein.	0.970
K5UJT3_PHACS	K5VRY3_PHACS	K5UJT3	K5VRY3	Uncharacterized protein.	RRM domain-containing protein.	0.651
K5UJT3_PHACS	K5VUD7_PHACS	K5UJT3	K5VUD7	Uncharacterized protein.	Uncharacterized protein.	0.939
K5UJT3_PHACS	K5VVN0_PHACS	K5UJT3	K5VVN0	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.991
K5UJT3_PHACS	K5W141_PHACS	K5UJT3	K5W141	Uncharacterized protein.	PWI domain-containing protein.	0.955
K5UJT3_PHACS	K5W239_PHACS	K5UJT3	K5W239	Uncharacterized protein.	RRM domain-containing protein.	0.994
K5UJT3_PHACS	K5W7B5_PHACS	K5UJT3	K5W7B5	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.994
K5UJT3_PHACS	K5W9E1_PHACS	K5UJT3	K5W9E1	Uncharacterized protein.	Uncharacterized protein.	0.440
K5UJT3_PHACS	K5W9F7_PHACS	K5UJT3	K5W9F7	Uncharacterized protein.	Uncharacterized protein.	0.772
K5UJT3_PHACS	K5W9U6_PHACS	K5UJT3	K5W9U6	Uncharacterized protein.	Uncharacterized protein.	0.440
K5UJT3_PHACS	K5WI96_PHACS	K5UJT3	K5WI96	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.974
K5UJT3_PHACS	K5WN06_PHACS	K5UJT3	K5WN06	Uncharacterized protein.	Glycoside hydrolase family 16 protein.	0.426
K5UJT3_PHACS	K5WNW8_PHACS	K5UJT3	K5WNW8	Uncharacterized protein.	Uncharacterized protein.	0.638
K5UJT3_PHACS	K5WPG6_PHACS	K5UJT3	K5WPG6	Uncharacterized protein.	Uncharacterized protein.	0.412
K5UJT3_PHACS	K5WPY3_PHACS	K5UJT3	K5WPY3	Uncharacterized protein.	Uncharacterized protein.	0.886
K5UJT3_PHACS	K5WSY6_PHACS	K5UJT3	K5WSY6	Uncharacterized protein.	Pinin_SDK_memA domain-containing protein.	0.669
K5UJT3_PHACS	K5X9H4_PHACS	K5UJT3	K5X9H4	Uncharacterized protein.	MIF4G domain-containing protein.	0.954
K5UJT3_PHACS	K5XC65_PHACS	K5UJT3	K5XC65	Uncharacterized protein.	Uncharacterized protein.	0.440