(5 nodes) U1 snRNP network (Phanerochaete carnosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K5UJT3_PHACS	Uncharacterized protein. (615 aa)
	K5UYZ6_PHACS	Uncharacterized protein. (307 aa)
	K5VFJ2_PHACS	Uncharacterized protein. (844 aa)
	K5W239_PHACS	RRM domain-containing protein. (386 aa)
	K5W7B5_PHACS	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (201 aa)

Your Current Organism:

Phanerochaete carnosa

NCBI taxonomy Id: 650164
Other names: P. carnosa HHB-10118-sp, Phanerochaete carnosa HHB-10118-sp

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5UJT3_PHACS	K5UYZ6_PHACS	K5UJT3	K5UYZ6	Uncharacterized protein.	Uncharacterized protein.	0.997
K5UJT3_PHACS	K5VFJ2_PHACS	K5UJT3	K5VFJ2	Uncharacterized protein.	Uncharacterized protein.	0.970
K5UJT3_PHACS	K5W239_PHACS	K5UJT3	K5W239	Uncharacterized protein.	RRM domain-containing protein.	0.994
K5UJT3_PHACS	K5W7B5_PHACS	K5UJT3	K5W7B5	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.994
K5UYZ6_PHACS	K5UJT3_PHACS	K5UYZ6	K5UJT3	Uncharacterized protein.	Uncharacterized protein.	0.997
K5UYZ6_PHACS	K5VFJ2_PHACS	K5UYZ6	K5VFJ2	Uncharacterized protein.	Uncharacterized protein.	0.936
K5UYZ6_PHACS	K5W239_PHACS	K5UYZ6	K5W239	Uncharacterized protein.	RRM domain-containing protein.	0.994
K5UYZ6_PHACS	K5W7B5_PHACS	K5UYZ6	K5W7B5	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.978
K5VFJ2_PHACS	K5UJT3_PHACS	K5VFJ2	K5UJT3	Uncharacterized protein.	Uncharacterized protein.	0.970
K5VFJ2_PHACS	K5UYZ6_PHACS	K5VFJ2	K5UYZ6	Uncharacterized protein.	Uncharacterized protein.	0.936
K5VFJ2_PHACS	K5W239_PHACS	K5VFJ2	K5W239	Uncharacterized protein.	RRM domain-containing protein.	0.945
K5VFJ2_PHACS	K5W7B5_PHACS	K5VFJ2	K5W7B5	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.910
K5W239_PHACS	K5UJT3_PHACS	K5W239	K5UJT3	RRM domain-containing protein.	Uncharacterized protein.	0.994
K5W239_PHACS	K5UYZ6_PHACS	K5W239	K5UYZ6	RRM domain-containing protein.	Uncharacterized protein.	0.994
K5W239_PHACS	K5VFJ2_PHACS	K5W239	K5VFJ2	RRM domain-containing protein.	Uncharacterized protein.	0.945
K5W239_PHACS	K5W7B5_PHACS	K5W239	K5W7B5	RRM domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.997
K5W7B5_PHACS	K5UJT3_PHACS	K5W7B5	K5UJT3	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Uncharacterized protein.	0.994
K5W7B5_PHACS	K5UYZ6_PHACS	K5W7B5	K5UYZ6	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Uncharacterized protein.	0.978
K5W7B5_PHACS	K5VFJ2_PHACS	K5W7B5	K5VFJ2	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Uncharacterized protein.	0.910
K5W7B5_PHACS	K5W239_PHACS	K5W7B5	K5W239	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	RRM domain-containing protein.	0.997