(5 nodes) U1 snRNA binding network (Phanerochaete carnosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K5WL25_PHACS	Uncharacterized protein. (258 aa)
	K5WCE9_PHACS	Uncharacterized protein. (267 aa)
	K5W7B5_PHACS	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (201 aa)
	K5W239_PHACS	RRM domain-containing protein. (386 aa)
	K5VYN8_PHACS	MPN domain-containing protein. (2353 aa)

Your Current Organism:

Phanerochaete carnosa

NCBI taxonomy Id: 650164
Other names: P. carnosa HHB-10118-sp, Phanerochaete carnosa HHB-10118-sp

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5VYN8_PHACS	K5W239_PHACS	K5VYN8	K5W239	MPN domain-containing protein.	RRM domain-containing protein.	0.890
K5VYN8_PHACS	K5W7B5_PHACS	K5VYN8	K5W7B5	MPN domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.734
K5VYN8_PHACS	K5WCE9_PHACS	K5VYN8	K5WCE9	MPN domain-containing protein.	Uncharacterized protein.	0.873
K5VYN8_PHACS	K5WL25_PHACS	K5VYN8	K5WL25	MPN domain-containing protein.	Uncharacterized protein.	0.909
K5W239_PHACS	K5VYN8_PHACS	K5W239	K5VYN8	RRM domain-containing protein.	MPN domain-containing protein.	0.890
K5W239_PHACS	K5W7B5_PHACS	K5W239	K5W7B5	RRM domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.997
K5W239_PHACS	K5WCE9_PHACS	K5W239	K5WCE9	RRM domain-containing protein.	Uncharacterized protein.	0.945
K5W239_PHACS	K5WL25_PHACS	K5W239	K5WL25	RRM domain-containing protein.	Uncharacterized protein.	0.945
K5W7B5_PHACS	K5VYN8_PHACS	K5W7B5	K5VYN8	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	MPN domain-containing protein.	0.734
K5W7B5_PHACS	K5W239_PHACS	K5W7B5	K5W239	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	RRM domain-containing protein.	0.997
K5W7B5_PHACS	K5WCE9_PHACS	K5W7B5	K5WCE9	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Uncharacterized protein.	0.983
K5W7B5_PHACS	K5WL25_PHACS	K5W7B5	K5WL25	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Uncharacterized protein.	0.974
K5WCE9_PHACS	K5VYN8_PHACS	K5WCE9	K5VYN8	Uncharacterized protein.	MPN domain-containing protein.	0.873
K5WCE9_PHACS	K5W239_PHACS	K5WCE9	K5W239	Uncharacterized protein.	RRM domain-containing protein.	0.945
K5WCE9_PHACS	K5W7B5_PHACS	K5WCE9	K5W7B5	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.983
K5WCE9_PHACS	K5WL25_PHACS	K5WCE9	K5WL25	Uncharacterized protein.	Uncharacterized protein.	0.900
K5WL25_PHACS	K5VYN8_PHACS	K5WL25	K5VYN8	Uncharacterized protein.	MPN domain-containing protein.	0.909
K5WL25_PHACS	K5W239_PHACS	K5WL25	K5W239	Uncharacterized protein.	RRM domain-containing protein.	0.945
K5WL25_PHACS	K5W7B5_PHACS	K5WL25	K5W7B5	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.974
K5WL25_PHACS	K5WCE9_PHACS	K5WL25	K5WCE9	Uncharacterized protein.	Uncharacterized protein.	0.900