26 items (Phanerochaete carnosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K5UK26_PHACS	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (367 aa)
	K5UWQ9_PHACS	Uncharacterized protein. (360 aa)
	K5UXB1_PHACS	Uncharacterized protein. (170 aa)
	K5V327_PHACS	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (989 aa)
	K5V6I8_PHACS	TPR_REGION domain-containing protein. (397 aa)
	K5V741_PHACS	Uncharacterized protein. (320 aa)
	K5VDA5_PHACS	CYCLIN domain-containing protein; Belongs to the cyclin family. (344 aa)
	K5VEI0_PHACS	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (863 aa)
	K5VTW9_PHACS	RPOL4c domain-containing protein. (126 aa)
	K5VV23_PHACS	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (153 aa)
	K5VVN0_PHACS	Nuclear cap-binding protein subunit 2. (225 aa)
	K5VYN6_PHACS	Uncharacterized protein. (94 aa)
	K5W0I9_PHACS	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (124 aa)
	K5W1U7_PHACS	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (472 aa)
	K5W282_PHACS	Uncharacterized protein. (64 aa)
	K5W688_PHACS	RPOLD domain-containing protein. (399 aa)
	K5W900_PHACS	Helicase ATP-binding domain-containing protein. (792 aa)
	K5W9B5_PHACS	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1753 aa)
	K5W9F7_PHACS	Uncharacterized protein. (620 aa)
	K5WFB4_PHACS	Uncharacterized protein. (208 aa)
	K5WFI8_PHACS	Uncharacterized protein. (835 aa)
	K5WI61_PHACS	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (707 aa)
	K5WUK9_PHACS	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (451 aa)
	K5X3Y7_PHACS	RNA_pol_L_2 domain-containing protein. (141 aa)
	K5X9H4_PHACS	MIF4G domain-containing protein. (869 aa)
	K5XE76_PHACS	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1237 aa)

Your Current Organism:

Phanerochaete carnosa

NCBI taxonomy Id: 650164
Other names: P. carnosa HHB-10118-sp, Phanerochaete carnosa HHB-10118-sp

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K5UK26_PHACS	K5UWQ9_PHACS	K5UK26	K5UWQ9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.998
K5UK26_PHACS	K5UXB1_PHACS	K5UK26	K5UXB1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.902
K5UK26_PHACS	K5V327_PHACS	K5UK26	K5V327	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.877
K5UK26_PHACS	K5V741_PHACS	K5UK26	K5V741	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.823
K5UK26_PHACS	K5VDA5_PHACS	K5UK26	K5VDA5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.998
K5UK26_PHACS	K5VEI0_PHACS	K5UK26	K5VEI0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.844
K5UK26_PHACS	K5VTW9_PHACS	K5UK26	K5VTW9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RPOL4c domain-containing protein.	0.920
K5UK26_PHACS	K5VV23_PHACS	K5UK26	K5VV23	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.815
K5UK26_PHACS	K5VYN6_PHACS	K5UK26	K5VYN6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.807
K5UK26_PHACS	K5W0I9_PHACS	K5UK26	K5W0I9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.821
K5UK26_PHACS	K5W1U7_PHACS	K5UK26	K5W1U7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.985
K5UK26_PHACS	K5W282_PHACS	K5UK26	K5W282	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.810
K5UK26_PHACS	K5W688_PHACS	K5UK26	K5W688	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RPOLD domain-containing protein.	0.930
K5UK26_PHACS	K5W900_PHACS	K5UK26	K5W900	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Helicase ATP-binding domain-containing protein.	0.992
K5UK26_PHACS	K5W9B5_PHACS	K5UK26	K5W9B5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.991
K5UK26_PHACS	K5WFB4_PHACS	K5UK26	K5WFB4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.811
K5UK26_PHACS	K5WFI8_PHACS	K5UK26	K5WFI8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.988
K5UK26_PHACS	K5WI61_PHACS	K5UK26	K5WI61	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.827
K5UK26_PHACS	K5WUK9_PHACS	K5UK26	K5WUK9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.987
K5UK26_PHACS	K5X3Y7_PHACS	K5UK26	K5X3Y7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RNA_pol_L_2 domain-containing protein.	0.827