47 items (Pseudomonas cedrina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDT13020.1	Two-component system, OmpR family, heavy metal sensor histidine kinase CusS; Member of a two-component regulatory system. (466 aa)
	SDS95684.1	Two-component system, NarL family, sensor histidine kinase BarA. (917 aa)
	SDS91762.1	PAS domain S-box-containing protein. (380 aa)
	SDS88490.1	Signal transduction histidine kinase. (570 aa)
	SDT58408.1	Two-component system, NtrC family, sensor histidine kinase KinB. (595 aa)
	SDT60902.1	Osmolarity sensor protein envZ. (437 aa)
	SDT61293.1	Two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB. (602 aa)
	SDT62046.1	Nitrogen regulation protein NR(II); PAS/PAC sensor signal transduction histidine kinase /signal transduction histidine kinase, nitrogen specific, NtrB. (361 aa)
	SDT65018.1	Signal transduction histidine kinase. (924 aa)
	SDT65239.1	PAS domain S-box-containing protein. (908 aa)
	SDT21289.1	Two-component system, chemotaxis family, sensor kinase CheA. (740 aa)
	SDT22200.1	Two-component system, sensor histidine kinase FlrB. (404 aa)
	SDT22989.1	Na+/proline symporter. (1156 aa)
	SDT29174.1	Two-component system, OmpR family, sensor histidine kinase PhoQ. (448 aa)
	SDT29256.1	Two-component system, OmpR family, sensor histidine kinase RstB. (536 aa)
	SDT32872.1	Signal transduction histidine kinase. (447 aa)
	SDT33906.1	PAS domain S-box-containing protein. (678 aa)
	SDT34519.1	Two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB. (588 aa)
	SDT34707.1	Signal transduction histidine kinase. (489 aa)
	SDT35163.1	Signal transduction histidine kinase. (426 aa)
	SDT37975.1	Bacteriophytochrome (light-regulated signal transduction histidine kinase). (747 aa)
	SDT40417.1	PAS domain S-box-containing protein. (984 aa)
	SDT20488.1	Signal transduction histidine kinase. (439 aa)
	SDT44891.1	Signal transduction histidine kinase. (796 aa)
	SDT49314.1	Two-component system, OmpR family, sensor histidine kinase CreC. (479 aa)
	SDT55323.1	PAS/PAC sensor signal transduction histidine kinase. (440 aa)
	SDT57177.1	Sensor domain CHASE2-containing protein. (759 aa)
	SDR82321.1	Two-component system, sensor histidine kinase RegB. (420 aa)
	SDR87387.1	Two-component system, OmpR family, heavy metal sensor histidine kinase CusS; Member of a two-component regulatory system. (454 aa)
	SDR93576.1	Response regulator receiver domain-containing protein. (459 aa)
	SDR94279.1	Signal transduction histidine kinase. (589 aa)
	SDR94468.1	Two-component system, sensor histidine kinase AauS. (633 aa)
	SDS07397.1	Two-component system, OmpR family, sensor histidine kinase TctE. (462 aa)
	SDS16628.1	Two-component system, OmpR family, sensor histidine kinase KdpD. (883 aa)
	SDS19182.1	Signal transduction histidine kinase. (795 aa)
	SDS22646.1	Signal transduction histidine kinase. (633 aa)
	SDS23160.1	Signal transduction histidine kinase. (345 aa)
	SDS29285.1	Signal transduction histidine kinase. (437 aa)
	SDS46062.1	Signal transduction histidine kinase. (464 aa)
	SDS51799.1	Two-component system, OmpR family, sensor kinase. (433 aa)
	SDS53399.1	His Kinase A (phospho-acceptor) domain-containing protein. (726 aa)
	SDS58501.1	PAS domain S-box-containing protein. (533 aa)
	SDS69606.1	Signal transduction histidine kinase. (1165 aa)
	SDS69732.1	Signal transduction histidine kinase. (397 aa)
	SDS69862.1	His Kinase A (phospho-acceptor) domain-containing protein. (559 aa)
	SDS83861.1	Two-component system, OmpR family, sensor kinase ParS. (425 aa)
	SDS87587.1	PAS domain S-box-containing protein. (831 aa)

Your Current Organism:

Pseudomonas cedrina

NCBI taxonomy Id: 651740
Other names: CFML 96-198, CIP 105541, DSM 17516, P. cedrina, Pseudomonas cedrella, Pseudomonas cedrina corrig. Dabboussi et al. 2002 emend. Behrendt et al. 2009, Pseudomonas sp. H-R, Pseudomonas sp. HG-K2, Pseudomonas sp. LB-C, Pseudomonas sp. LB-Z10, Pseudomonas sp. LB-Z3

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDR82321.1	SDR93576.1	SAMN04490182_0069	SAMN04490182_0343	Two-component system, sensor histidine kinase RegB.	Response regulator receiver domain-containing protein.	0.504
SDR82321.1	SDS53399.1	SAMN04490182_0069	SAMN04490182_1759	Two-component system, sensor histidine kinase RegB.	His Kinase A (phospho-acceptor) domain-containing protein.	0.767
SDR82321.1	SDS58501.1	SAMN04490182_0069	SAMN04490182_1881	Two-component system, sensor histidine kinase RegB.	PAS domain S-box-containing protein.	0.935
SDR82321.1	SDS69606.1	SAMN04490182_0069	SAMN04490182_2156	Two-component system, sensor histidine kinase RegB.	Signal transduction histidine kinase.	0.918
SDR82321.1	SDS69732.1	SAMN04490182_0069	SAMN04490182_2159	Two-component system, sensor histidine kinase RegB.	Signal transduction histidine kinase.	0.447
SDR82321.1	SDS69862.1	SAMN04490182_0069	SAMN04490182_2162	Two-component system, sensor histidine kinase RegB.	His Kinase A (phospho-acceptor) domain-containing protein.	0.787
SDR82321.1	SDS87587.1	SAMN04490182_0069	SAMN04490182_2637	Two-component system, sensor histidine kinase RegB.	PAS domain S-box-containing protein.	0.936
SDR82321.1	SDS88490.1	SAMN04490182_0069	SAMN04490182_2662	Two-component system, sensor histidine kinase RegB.	Signal transduction histidine kinase.	0.777
SDR82321.1	SDS95684.1	SAMN04490182_0069	SAMN04490182_2869	Two-component system, sensor histidine kinase RegB.	Two-component system, NarL family, sensor histidine kinase BarA.	0.902
SDR82321.1	SDT22989.1	SAMN04490182_0069	SAMN04490182_3709	Two-component system, sensor histidine kinase RegB.	Na+/proline symporter.	0.897
SDR82321.1	SDT35163.1	SAMN04490182_0069	SAMN04490182_4235	Two-component system, sensor histidine kinase RegB.	Signal transduction histidine kinase.	0.433
SDR82321.1	SDT37975.1	SAMN04490182_0069	SAMN04490182_4368	Two-component system, sensor histidine kinase RegB.	Bacteriophytochrome (light-regulated signal transduction histidine kinase).	0.525
SDR82321.1	SDT55323.1	SAMN04490182_0069	SAMN04490182_5375	Two-component system, sensor histidine kinase RegB.	PAS/PAC sensor signal transduction histidine kinase.	0.520
SDR82321.1	SDT65018.1	SAMN04490182_0069	SAMN04490182_6150	Two-component system, sensor histidine kinase RegB.	Signal transduction histidine kinase.	0.447
SDR82321.1	SDT65239.1	SAMN04490182_0069	SAMN04490182_6173	Two-component system, sensor histidine kinase RegB.	PAS domain S-box-containing protein.	0.585
SDR87387.1	SDR93576.1	SAMN04490182_0192	SAMN04490182_0343	Two-component system, OmpR family, heavy metal sensor histidine kinase CusS; Member of a two-component regulatory system.	Response regulator receiver domain-containing protein.	0.667
SDR87387.1	SDS07397.1	SAMN04490182_0192	SAMN04490182_0672	Two-component system, OmpR family, heavy metal sensor histidine kinase CusS; Member of a two-component regulatory system.	Two-component system, OmpR family, sensor histidine kinase TctE.	0.407
SDR87387.1	SDS16628.1	SAMN04490182_0192	SAMN04490182_0888	Two-component system, OmpR family, heavy metal sensor histidine kinase CusS; Member of a two-component regulatory system.	Two-component system, OmpR family, sensor histidine kinase KdpD.	0.406
SDR87387.1	SDS19182.1	SAMN04490182_0192	SAMN04490182_0946	Two-component system, OmpR family, heavy metal sensor histidine kinase CusS; Member of a two-component regulatory system.	Signal transduction histidine kinase.	0.670
SDR87387.1	SDS22646.1	SAMN04490182_0192	SAMN04490182_1030	Two-component system, OmpR family, heavy metal sensor histidine kinase CusS; Member of a two-component regulatory system.	Signal transduction histidine kinase.	0.683

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