STRINGSTRING
ADU42912.1 ADU42912.1 ADU42931.1 ADU42931.1 ADU43002.1 ADU43002.1 ADU43049.1 ADU43049.1 ADU43056.1 ADU43056.1 ADU43079.1 ADU43079.1 ADU43093.1 ADU43093.1 ADU43218.1 ADU43218.1 ADU43225.1 ADU43225.1 ADU43282.1 ADU43282.1 ADU43297.1 ADU43297.1 ADU43315.1 ADU43315.1 ADU43447.1 ADU43447.1 ADU43455.1 ADU43455.1 rpsU rpsU ADU43678.1 ADU43678.1 ADU43685.1 ADU43685.1 rplJ rplJ rplL rplL rpsL rpsL rpsG rpsG rpsJ rpsJ rplC rplC rplD rplD rplW rplW rplB rplB rpsS rpsS rplV rplV rpsC rpsC rplP rplP rpmC rpmC rpsQ rpsQ rplN rplN rplX rplX rplE rplE rpsN rpsN rpsH rpsH rplF rplF rplR rplR rpsE rpsE rpmD rpmD rplO rplO rpsK rpsK rplQ rplQ ADU43806.1 ADU43806.1 ADU43823.1 ADU43823.1 ADU43840.1 ADU43840.1 rpmG rpmG ADU43934.1 ADU43934.1 rplI rplI rpsR rpsR rpsF rpsF ADU43969.1 ADU43969.1 ADU44040.1 ADU44040.1 ADU44077.1 ADU44077.1 rpsB rpsB ADU44195.1 ADU44195.1 ADU44246.1 ADU44246.1 ADU44262.1 ADU44262.1 rpsI rpsI rplM rplM ihfA ihfA ADU44369.1 ADU44369.1 recO recO ADU44469.1 ADU44469.1 rpmB rpmB infB infB rpsO rpsO ADU41864.1 ADU41864.1 ADU41882.1 ADU41882.1 ADU41925.1 ADU41925.1 nth nth dnaQ dnaQ ADU41977.1 ADU41977.1 ADU42000.1 ADU42000.1 ADU42013.1 ADU42013.1 rpsP rpsP dnaA dnaA recF recF ADU41653.1 ADU41653.1 rpmI rpmI hpf hpf ADU41710.1 ADU41710.1 ihfB ihfB rpsT rpsT ADU46551.1 ADU46551.1 ADU46500.1 ADU46500.1 ADU46469.1 ADU46469.1 cbbM cbbM ackA ackA smc smc ADU46224.1 ADU46224.1 rplY rplY ADU46099.1 ADU46099.1 ADU46069.1 ADU46069.1 rpmJ rpmJ rpsU-2 rpsU-2 ADU45771.1 ADU45771.1 ADU45719.1 ADU45719.1 dnaG dnaG ADU45619.1 ADU45619.1 ADU45565.1 ADU45565.1 ADU45558.1 ADU45558.1 cbbL cbbL ADU45515.1 ADU45515.1 ADU45507.1 ADU45507.1 rpsD rpsD ADU45421.1 ADU45421.1 ADU45407.1 ADU45407.1 ADU45388.1 ADU45388.1 ADU45256.1 ADU45256.1 ADU45241.1 ADU45241.1 ADU45240.1 ADU45240.1 ADU45239.1 ADU45239.1 ADU45166.1 ADU45166.1 ADU45143.1 ADU45143.1 ADU45142.1 ADU45142.1 ADU45093.1 ADU45093.1 ADU45015.1 ADU45015.1 ADU44923.1 ADU44923.1 guaB guaB ADU44884.1 ADU44884.1 ADU44882.1 ADU44882.1 ADU44834.1 ADU44834.1 ADU44687.1 ADU44687.1 ADU44663.1 ADU44663.1 ADU44619.1 ADU44619.1 ADU44617.1 ADU44617.1 cobB cobB priA priA rpmA rpmA rplU rplU ADU42168.1 ADU42168.1 ADU42169.1 ADU42169.1 rpmF rpmF ADU42334.1 ADU42334.1 recR recR ADU42501.1 ADU42501.1 ADU42507.1 ADU42507.1 ADU42508.1 ADU42508.1 rpmE rpmE ADU42812.1 ADU42812.1 ADU42867.1 ADU42867.1
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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ADU42912.1Putative TolA; KEGG: nha:Nham_3513 putative TolA. (332 aa)
ADU42931.1PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: oca:OCAR_7274 amine oxidase. (503 aa)
ADU43002.1KEGG: hha:Hhal_0249 hypothetical protein. (369 aa)
ADU43049.1PFAM: Transketolase central region; Transketolase domain protein; KEGG: cbd:CBUD_0706 pyruvate dehydrogenase E1 component beta subunit. (350 aa)
ADU43056.1TPR repeat-containing protein; KEGG: bra:BRADO1360 O-linked N-acetylglucosamine transferase; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat. (715 aa)
ADU43079.1KEGG: nha:Nham_1389 tetratricopeptide TPR_4 protein. (1266 aa)
ADU43093.1PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: nha:Nham_2565 glutathione-dependent formaldehyde-activating, GFA. (119 aa)
ADU43218.1KEGG: bja:blr2996 ethanolamine ammonia-lyase small subunit; PFAM: Ethanolamine ammonia-lyase light chain; Belongs to the EutC family. (255 aa)
ADU43225.1TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; KEGG: bja:blr3004 squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase. (653 aa)
ADU43282.1KEGG: nha:Nham_0385 tetratricopeptide TPR_2. (263 aa)
ADU43297.1KEGG: nha:Nham_0400 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family. (473 aa)
ADU43315.1KEGG: oca:OCAR_4053 hypothetical protein. (139 aa)
ADU43447.1DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (561 aa)
ADU43455.1PFAM: FAD dependent oxidoreductase; KEGG: bja:blr6586 phytoene dehydrogenase. (536 aa)
rpsUKEGG: bja:blr0365 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (91 aa)
ADU43678.1KEGG: bra:BRADO3437 hypothetical protein. (186 aa)
ADU43685.1UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase-like protein; KEGG: azl:AZL_d04780 similar to UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase. (394 aa)
rplJRibosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (172 aa)
rplLRibosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (124 aa)
rpsLRibosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (123 aa)
rpsGRibosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
rpsJRibosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
rplC50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (241 aa)
rplDRibosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. (206 aa)
rplWRibosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (99 aa)
rplBRibosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (278 aa)
rpsSRibosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
rplVRibosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (127 aa)
rpsCRibosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (235 aa)
rplPRibosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (137 aa)
rpmCKEGG: bbt:BBta_5062 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (69 aa)
rpsQ30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (82 aa)
rplNRibosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rplXRibosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (104 aa)
rplE50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (185 aa)
rpsNRibosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa)
rpsHRibosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa)
rplFRibosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa)
rplRRibosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (120 aa)
rpsERibosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (191 aa)
rpmDKEGG: nwi:Nwi_1382 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30. (64 aa)
rplORibosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (161 aa)
rpsK30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa)
rplQKEGG: bbt:BBta_5045 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17. (139 aa)
ADU43806.1AAA ATPase central domain protein; KEGG: bja:bll5367 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase. (443 aa)
ADU43823.1KEGG: bja:bll2800 bifunctional serine/threonine kinase and phosphatase; PFAM: Serine/threonine-protein kinase-like domain; Stage II sporulation E family protein; SMART: serine/threonine protein kinase; protein phosphatase 2C domain protein; Tyrosine-protein kinase, catalytic domain. (577 aa)
ADU43840.1Hypothetical protein; KEGG: bja:blr5311 histon H1. (120 aa)
rpmGKEGG: nha:Nham_2441 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (55 aa)
ADU43934.1Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (498 aa)
rplIRibosomal protein L9; Binds to the 23S rRNA. (195 aa)
rpsRRibosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (79 aa)
rpsFRibosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (158 aa)
ADU43969.1KEGG: bja:bll4123 hypothetical protein. (225 aa)
ADU44040.1KEGG: ret:RHE_PB00040 hypothetical protein. (245 aa)
ADU44077.1KEGG: nha:Nham_2223 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. (103 aa)
rpsBRibosomal protein S2; KEGG: nha:Nham_1694 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (331 aa)
ADU44195.1PFAM: heat shock protein Hsp20; KEGG: pde:Pden_3146 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family. (166 aa)
ADU44246.1PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mpt:Mpe_A0536 putative cytidine deaminase. (531 aa)
ADU44262.1KEGG: bbt:BBta_4393 hypothetical protein. (134 aa)
rpsIPFAM: ribosomal protein S9; KEGG: bbt:BBta_4591 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (160 aa)
rplMRibosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (154 aa)
ihfAIntegration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (118 aa)
ADU44369.1KEGG: msl:Msil_2979 hypothetical protein. (190 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (250 aa)
ADU44469.1KEGG: gur:Gura_0796 hypothetical protein. (186 aa)
rpmBKEGG: bbt:BBta_7548 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (101 aa)
infBTranslation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (888 aa)
rpsORibosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
ADU41864.1KEGG: nwi:Nwi_0335 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; Belongs to the UPF0758 family. (237 aa)
ADU41882.1All-trans-retinol 13,14-reductase; KEGG: bbt:BBta_7528 putative phytoene dehydrogenase and related proteins; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase. (712 aa)
ADU41925.1PFAM: peptidase S10 serine carboxypeptidase; KEGG: bja:bll5514 hypothetical protein. (521 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (260 aa)
dnaQDNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (232 aa)
ADU41977.1TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: nwi:Nwi_0094 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family. (296 aa)
ADU42000.1KEGG: bja:blr0595 hypothetical protein; PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein. (225 aa)
ADU42013.1KEGG: alv:Alvin_2545 ribulose-bisphosphate carboxylase; PFAM: ribulose bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family. (432 aa)
rpsPKEGG: bra:BRADO0378 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (106 aa)
dnaAChromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (469 aa)
recFDNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (394 aa)
ADU41653.1PFAM: Circadian clock protein KaiC central region; KEGG: rsk:RSKD131_4430 circadian clock protein KaiC; SMART: AAA ATPase. (563 aa)
rpmIKEGG: bbt:BBta_0216 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (66 aa)
hpfRibosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (202 aa)
ADU41710.1Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (565 aa)
ihfBIntegration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (104 aa)
rpsTRibosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa)
ADU46551.1TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; helicase domain protein; DEAD/DEAH box helicase domain protein; HRDC domain protein; KEGG: bbt:BBta_6924 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein. (617 aa)
ADU46500.1KEGG: bja:bll2703 hypothetical protein. (527 aa)
ADU46469.1TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: bra:BRADO6493 putative ATP:cob(I)alamin adenosyltransferase, monofunctional PduO type; PFAM: cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (190 aa)
cbbMRibulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. (461 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (398 aa)
smcChromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1154 aa)
ADU46224.1KEGG: hoh:Hoch_3149 ATP-dependent DNA helicase, RecQ family. (181 aa)
rplYRibosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (229 aa)
ADU46099.1PFAM: DnaB domain protein helicase domain protein; KEGG: bja:blr5258 replicative DNA helicase. (239 aa)
ADU46069.1PFAM: Rubrerythrin; protein of unknown function DUF125 transmembrane; KEGG: bbt:BBta_7128 hypothetical protein. (323 aa)
rpmJTIGRFAM: ribosomal protein L36; KEGG: nha:Nham_1214 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (41 aa)
rpsU-2KEGG: oca:OCAR_5101 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (87 aa)
ADU45771.1KEGG: bja:blr3164 hypothetical protein. (266 aa)
ADU45719.1PFAM: N-formylglutamate amidohydrolase; KEGG: bbt:BBta_6779 hypothetical protein. (265 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (668 aa)
ADU45619.1PFAM: ATPase associated with various cellular activities AAA_5; KEGG: bja:blr3216 NorQ protein. (270 aa)
ADU45565.1KEGG: bra:BRADO1610 phytoene dehydrogenase (phytoene desaturase); TIGRFAM: phytoene desaturase; PFAM: amine oxidase. (511 aa)
ADU45558.1Phytoene desaturase; KEGG: bra:BRADO1614 hydroxyneurosporene and rhodopin dehydrogenase; TIGRFAM: phytoene desaturase; PFAM: FAD dependent oxidoreductase. (519 aa)
cbbLRibulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (485 aa)
ADU45515.1KEGG: bbt:BBta_6396 ribulose 1,5-bisphosphate carboxylase small subunit; PFAM: ribulose bisphosphate carboxylase small chain. (140 aa)
ADU45507.1PFAM: protein of unknown function DUF477; KEGG: bbt:BBta_6688 hypothetical protein. (300 aa)
rpsDRibosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (205 aa)
ADU45421.1Hypothetical protein; KEGG: bja:blr5311 histon H1. (71 aa)
ADU45407.1KEGG: bbt:BBta_5336 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; UspA domain protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain. (479 aa)
ADU45388.1KEGG: bja:bll5248 hypothetical protein. (286 aa)
ADU45256.1PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bra:BRADO2681 putative glutathione-dependent formaldehyde-activating (GFA). (154 aa)
ADU45241.1PFAM: class II aldolase/adducin family protein; KEGG: bra:BRADO2701 aldolase II superfamily protein. (260 aa)
ADU45240.1KEGG: bja:blr3067 hypothetical protein. (320 aa)
ADU45239.1PFAM: ROSMUCR transcriptional regulator; KEGG: nha:Nham_2627 MucR family transcriptional regulator. (138 aa)
ADU45166.1PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mrd:Mrad2831_2003 glutathione-dependent formaldehyde-activating GFA. (141 aa)
ADU45143.1Rubrerythrin; KEGG: msl:Msil_3779 rubrerythrin. (162 aa)
ADU45142.1PFAM: ferredoxin; KEGG: mgm:Mmc1_1188 ferredoxin. (332 aa)
ADU45093.1PFAM: Protein of unknown function DUF2059; KEGG: nwi:Nwi_1222 hypothetical protein. (169 aa)
ADU45015.1KEGG: oca:OCAR_5032 hypothetical protein. (301 aa)
ADU44923.1PFAM: ribulose bisphosphate carboxylase large chain; KEGG: rru:Rru_A1998 ribulose 1,5-bisphosphate carboxylase large subunit. (366 aa)
guaBInosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (498 aa)
ADU44884.1KEGG: gdj:Gdia_2781 ParB domain protein nuclease; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease. (702 aa)
ADU44882.1Hypothetical protein; Manually curated; KEGG: bbt:BBta_7414 hypothetical protein. (333 aa)
ADU44834.1PFAM: RES domain protein; KEGG: mes:Meso_4398 hypothetical protein. (206 aa)
ADU44687.1ADP-ribosyl-(dinitrogen reductase) hydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; KEGG: mag:amb1576 ADP-ribosyl-[dinitrogen reductase] glycohydrolase; PFAM: ADP-ribosylation/Crystallin J1. (296 aa)
ADU44663.1KEGG: bbt:BBta_4223 putative lipase/esterase. (314 aa)
ADU44619.1PFAM: TfoX domain protein; KEGG: bra:BRADO3547 hypothetical protein. (167 aa)
ADU44617.1KEGG: bja:bll4348 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family. (469 aa)
cobBSilent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily. (253 aa)
priAPrimosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (736 aa)
rpmAKEGG: nha:Nham_0515 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (90 aa)
rplURibosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (126 aa)
ADU42168.1PFAM: protein of unknown function DUF29; KEGG: mrd:Mrad2831_3699 hypothetical protein. (170 aa)
ADU42169.1TIGRFAM: cobalt chelatase, pCobS small subunit; KEGG: oca:OCAR_4070 cobaltochelatase, CobS subunit; PFAM: ATPase associated with various cellular activities AAA_5. (331 aa)
rpmFKEGG: bra:BRADO0557 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; Belongs to the bacterial ribosomal protein bL32 family. (60 aa)
ADU42334.1Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (106 aa)
recRRecombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (201 aa)
ADU42501.1Helicase domain protein; KEGG: gox:GOX1504 ATP-dependent helicase HepA; PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicase. (921 aa)
ADU42507.1ParB domain protein nuclease; KEGG: bja:bll0065 putative DNA-binding protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease. (707 aa)
ADU42508.1KEGG: gdj:Gdia_2785 hypothetical protein. (354 aa)
rpmERibosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (75 aa)
ADU42812.1PFAM: DNA methylase N-4/N-6 domain protein; KEGG: nha:Nham_3225 DNA methylase N-4/N-6; Belongs to the N(4)/N(6)-methyltransferase family. (376 aa)
ADU42867.1PFAM: protein of unknown function DUF159; KEGG: bja:blr2564 hypothetical protein; Belongs to the SOS response-associated peptidase family. (257 aa)
Your Current Organism:
Rhodopseudomonas palustris DX1
NCBI taxonomy Id: 652103
Other names: R. palustris DX-1, Rhodopseudomonas palustris DX-1, Rhodopseudomonas palustris str. DX-1, Rhodopseudomonas palustris strain DX-1
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