25 items (Biomphalaria glabrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9LYP1	CW-type domain-containing protein. (835 aa)
	A0A2C9LYZ6	RING-type domain-containing protein. (86 aa)
	A0A2C9M3K9	RING-type domain-containing protein. (308 aa)
	A0A2C9M4J4	Uncharacterized protein. (1924 aa)
	A0A2C9JDB7	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. (343 aa)
	A0A2C9JEZ3	RING-type domain-containing protein. (1165 aa)
	A0A2C9JWA1	RING-type domain-containing protein. (260 aa)
	A0A2C9JXD3	Endo/exonuclease/phosphatase domain-containing protein. (275 aa)
	A0A2C9K293	SMC_N domain-containing protein. (1083 aa)
	A0A2C9K3E7	Uncharacterized protein. (201 aa)
	A0A2C9KC49	RING-type domain-containing protein. (204 aa)
	A0A2C9KHX2	zf-CRD domain-containing protein. (127 aa)
	A0A2C9KZS8	Uncharacterized protein. (266 aa)
	A0A2C9L097	Uncharacterized protein. (131 aa)
	A0A2C9L3C5	CW-type domain-containing protein. (84 aa)
	A0A2C9L6C5	CW-type domain-containing protein. (925 aa)
	A0A2C9L7N3	Uncharacterized protein. (1635 aa)
	A0A2C9L872	RPA_interact_N domain-containing protein. (129 aa)
	A0A2C9LCP5	CW-type domain-containing protein. (693 aa)
	A0A2C9LHH2	Uncharacterized protein. (332 aa)
	A0A2C9LIR1	CW-type domain-containing protein. (829 aa)
	A0A2C9LKU0	Uncharacterized protein. (547 aa)
	A0A2C9LL56	Rb_C domain-containing protein. (192 aa)
	A0A2C9LU30	Uncharacterized protein. (576 aa)
	A0A2C9LV90	RING-type domain-containing protein. (290 aa)

Your Current Organism:

Biomphalaria glabrata

NCBI taxonomy Id: 6526
Other names: Australorbis glabratus, B. glabrata, Planorbis glabratus, bloodfluke planorb

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9JDB7	A0A2C9K293	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	SMC_N domain-containing protein.	0.696
A0A2C9JDB7	A0A2C9L7N3	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	Uncharacterized protein.	0.769
A0A2C9JDB7	A0A2C9LU30	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	Uncharacterized protein.	0.463
A0A2C9JWA1	A0A2C9LHH2	RING-type domain-containing protein.	Uncharacterized protein.	0.416
A0A2C9K293	A0A2C9JDB7	SMC_N domain-containing protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.696
A0A2C9K293	A0A2C9L7N3	SMC_N domain-containing protein.	Uncharacterized protein.	0.573
A0A2C9K293	A0A2C9LKU0	SMC_N domain-containing protein.	Uncharacterized protein.	0.447
A0A2C9K293	A0A2C9LL56	SMC_N domain-containing protein.	Rb_C domain-containing protein.	0.447
A0A2C9KC49	A0A2C9M4J4	RING-type domain-containing protein.	Uncharacterized protein.	0.534
A0A2C9L097	A0A2C9M3K9	Uncharacterized protein.	RING-type domain-containing protein.	0.602
A0A2C9L7N3	A0A2C9JDB7	Uncharacterized protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.769
A0A2C9L7N3	A0A2C9K293	Uncharacterized protein.	SMC_N domain-containing protein.	0.573
A0A2C9L7N3	A0A2C9LU30	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A2C9LHH2	A0A2C9JWA1	Uncharacterized protein.	RING-type domain-containing protein.	0.416
A0A2C9LHH2	A0A2C9LV90	Uncharacterized protein.	RING-type domain-containing protein.	0.416
A0A2C9LKU0	A0A2C9K293	Uncharacterized protein.	SMC_N domain-containing protein.	0.447
A0A2C9LL56	A0A2C9K293	Rb_C domain-containing protein.	SMC_N domain-containing protein.	0.447
A0A2C9LU30	A0A2C9JDB7	Uncharacterized protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.463
A0A2C9LU30	A0A2C9L7N3	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A2C9LV90	A0A2C9LHH2	RING-type domain-containing protein.	Uncharacterized protein.	0.416