7 items (Biomphalaria glabrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9KQ70	Uncharacterized protein. (612 aa)
	A0A2C9K662	CPSF_A domain-containing protein. (1141 aa)
	A0A2C9M0U7	WD_REPEATS_REGION domain-containing protein. (743 aa)
	A0A2C9LC49	Uncharacterized protein. (634 aa)
	A0A2C9K758	Uncharacterized protein. (533 aa)
	A0A2C9KEL2	Uncharacterized protein. (433 aa)
	A0A2C9KLW9	Uncharacterized protein. (795 aa)

Your Current Organism:

Biomphalaria glabrata

NCBI taxonomy Id: 6526
Other names: Australorbis glabratus, B. glabrata, Planorbis glabratus, bloodfluke planorb

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9K662	A0A2C9K758	CPSF_A domain-containing protein.	Uncharacterized protein.	0.969
A0A2C9K662	A0A2C9KEL2	CPSF_A domain-containing protein.	Uncharacterized protein.	0.995
A0A2C9K662	A0A2C9KLW9	CPSF_A domain-containing protein.	Uncharacterized protein.	0.826
A0A2C9K662	A0A2C9LC49	CPSF_A domain-containing protein.	Uncharacterized protein.	0.946
A0A2C9K662	A0A2C9M0U7	CPSF_A domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.995
A0A2C9K758	A0A2C9K662	Uncharacterized protein.	CPSF_A domain-containing protein.	0.969
A0A2C9K758	A0A2C9LC49	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A2C9KEL2	A0A2C9K662	Uncharacterized protein.	CPSF_A domain-containing protein.	0.995
A0A2C9KEL2	A0A2C9LC49	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A2C9KEL2	A0A2C9M0U7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.834
A0A2C9KLW9	A0A2C9K662	Uncharacterized protein.	CPSF_A domain-containing protein.	0.826
A0A2C9LC49	A0A2C9K662	Uncharacterized protein.	CPSF_A domain-containing protein.	0.946
A0A2C9LC49	A0A2C9K758	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A2C9LC49	A0A2C9KEL2	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A2C9LC49	A0A2C9M0U7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.658
A0A2C9M0U7	A0A2C9K662	WD_REPEATS_REGION domain-containing protein.	CPSF_A domain-containing protein.	0.995
A0A2C9M0U7	A0A2C9KEL2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.834
A0A2C9M0U7	A0A2C9LC49	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.658