16 items (Biomphalaria glabrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9LUP5	Reelin domain-containing protein. (110 aa)
	A0A2C9M898	Reelin domain-containing protein. (110 aa)
	A0A2C9M489	Uncharacterized protein. (95 aa)
	A0A2C9LQ60	Uncharacterized protein. (326 aa)
	A0A2C9LPA3	Uncharacterized protein. (770 aa)
	A0A2C9LL56	Rb_C domain-containing protein. (192 aa)
	A0A2C9LKU0	Uncharacterized protein. (547 aa)
	A0A2C9L0F3	TPR_REGION domain-containing protein. (373 aa)
	A0A2C9KZD6	CDT1 domain-containing protein. (363 aa)
	A0A2C9KVN9	CDT1 domain-containing protein. (271 aa)
	A0A2C9KQ23	CDT1 domain-containing protein. (176 aa)
	A0A2C9K5M1	TPR_REGION domain-containing protein. (588 aa)
	A0A2C9JQ86	TPR_REGION domain-containing protein. (506 aa)
	A0A2C9JN06	RING-type domain-containing protein. (91 aa)
	A0A2C9JI40	CULLIN_2 domain-containing protein; Belongs to the cullin family. (763 aa)
	A0A2C9JCN1	Uncharacterized protein. (810 aa)

Your Current Organism:

Biomphalaria glabrata

NCBI taxonomy Id: 6526
Other names: Australorbis glabratus, B. glabrata, Planorbis glabratus, bloodfluke planorb

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9JCN1	A0A2C9JN06	Uncharacterized protein.	RING-type domain-containing protein.	0.671
A0A2C9JCN1	A0A2C9JQ86	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.983
A0A2C9JCN1	A0A2C9K5M1	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.984
A0A2C9JCN1	A0A2C9LKU0	Uncharacterized protein.	Uncharacterized protein.	0.569
A0A2C9JCN1	A0A2C9LL56	Uncharacterized protein.	Rb_C domain-containing protein.	0.569
A0A2C9JCN1	A0A2C9LPA3	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A2C9JCN1	A0A2C9LUP5	Uncharacterized protein.	Reelin domain-containing protein.	0.883
A0A2C9JCN1	A0A2C9M489	Uncharacterized protein.	Uncharacterized protein.	0.975
A0A2C9JCN1	A0A2C9M898	Uncharacterized protein.	Reelin domain-containing protein.	0.883
A0A2C9JI40	A0A2C9JN06	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-type domain-containing protein.	0.823
A0A2C9JI40	A0A2C9LKU0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.590
A0A2C9JI40	A0A2C9LL56	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Rb_C domain-containing protein.	0.590
A0A2C9JN06	A0A2C9JCN1	RING-type domain-containing protein.	Uncharacterized protein.	0.671
A0A2C9JN06	A0A2C9JI40	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.823
A0A2C9JN06	A0A2C9JQ86	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.781
A0A2C9JN06	A0A2C9K5M1	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.876
A0A2C9JN06	A0A2C9L0F3	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.671
A0A2C9JN06	A0A2C9LPA3	RING-type domain-containing protein.	Uncharacterized protein.	0.658
A0A2C9JN06	A0A2C9LUP5	RING-type domain-containing protein.	Reelin domain-containing protein.	0.416
A0A2C9JN06	A0A2C9M489	RING-type domain-containing protein.	Uncharacterized protein.	0.580