6 items (Biomphalaria glabrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9M0F5	Uncharacterized protein. (190 aa)
	A0A2C9KXI1	Rod_C domain-containing protein. (209 aa)
	A0A2C9M8S8	Uncharacterized protein. (295 aa)
	A0A2C9LC20	Uncharacterized protein. (504 aa)
	A0A2C9LLH4	Uncharacterized protein. (743 aa)
	A0A2C9LN50	Uncharacterized protein. (495 aa)

Your Current Organism:

Biomphalaria glabrata

NCBI taxonomy Id: 6526
Other names: Australorbis glabratus, B. glabrata, Planorbis glabratus, bloodfluke planorb

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9KXI1	A0A2C9LC20	Rod_C domain-containing protein.	Uncharacterized protein.	0.973
A0A2C9KXI1	A0A2C9LLH4	Rod_C domain-containing protein.	Uncharacterized protein.	0.943
A0A2C9LC20	A0A2C9KXI1	Uncharacterized protein.	Rod_C domain-containing protein.	0.973
A0A2C9LC20	A0A2C9LLH4	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A2C9LC20	A0A2C9LN50	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A2C9LC20	A0A2C9M0F5	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A2C9LC20	A0A2C9M8S8	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A2C9LLH4	A0A2C9KXI1	Uncharacterized protein.	Rod_C domain-containing protein.	0.943
A0A2C9LLH4	A0A2C9LC20	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A2C9LLH4	A0A2C9LN50	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A2C9LLH4	A0A2C9M0F5	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A2C9LLH4	A0A2C9M8S8	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A2C9LN50	A0A2C9LC20	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A2C9LN50	A0A2C9LLH4	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A2C9M0F5	A0A2C9LC20	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A2C9M0F5	A0A2C9LLH4	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A2C9M8S8	A0A2C9LC20	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A2C9M8S8	A0A2C9LLH4	Uncharacterized protein.	Uncharacterized protein.	0.943