16 items (Biomphalaria glabrata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9L559	WD_REPEATS_REGION domain-containing protein. (125 aa)
	A0A2C9KKK8	Uncharacterized protein. (758 aa)
	A0A2C9K355	WD_REPEATS_REGION domain-containing protein. (222 aa)
	A0A2C9JY53	WD_REPEATS_REGION domain-containing protein. (531 aa)
	A0A2C9JUQ3	WD_REPEATS_REGION domain-containing protein. (1167 aa)
	A0A2C9JTF7	Uncharacterized protein. (1817 aa)
	A0A2C9JPC2	WD_REPEATS_REGION domain-containing protein. (508 aa)
	A0A2C9JNN5	WD_REPEATS_REGION domain-containing protein. (362 aa)
	A0A2C9JK08	Uncharacterized protein. (1958 aa)
	A0A2C9JHF3	WD_REPEATS_REGION domain-containing protein. (525 aa)
	A0A2C9JGU0	WD_REPEATS_REGION domain-containing protein. (1490 aa)
	A0A2C9LWV2	WD_REPEATS_REGION domain-containing protein. (554 aa)
	A0A2C9LSM1	WD_REPEATS_REGION domain-containing protein. (181 aa)
	A0A2C9LLT4	WD_REPEATS_REGION domain-containing protein. (190 aa)
	A0A2C9LC71	Eukaryotic translation initiation factor 3 subunit I. (255 aa)
	A0A2C9L3D4	WD_REPEATS_REGION domain-containing protein. (605 aa)

Your Current Organism:

Biomphalaria glabrata

NCBI taxonomy Id: 6526
Other names: Australorbis glabratus, B. glabrata, Planorbis glabratus, bloodfluke planorb

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9JGU0	A0A2C9JHF3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.661
A0A2C9JGU0	A0A2C9JK08	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.695
A0A2C9JGU0	A0A2C9JPC2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.661
A0A2C9JGU0	A0A2C9JTF7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.661
A0A2C9JGU0	A0A2C9JUQ3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.983
A0A2C9JGU0	A0A2C9JY53	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.661
A0A2C9JHF3	A0A2C9JGU0	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.661
A0A2C9JHF3	A0A2C9JUQ3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.528
A0A2C9JHF3	A0A2C9JY53	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.909
A0A2C9JHF3	A0A2C9KKK8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.866
A0A2C9JK08	A0A2C9JGU0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.695
A0A2C9JK08	A0A2C9JUQ3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.528
A0A2C9JK08	A0A2C9KKK8	Uncharacterized protein.	Uncharacterized protein.	0.645
A0A2C9JNN5	A0A2C9L3D4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.458
A0A2C9JPC2	A0A2C9JGU0	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.661
A0A2C9JPC2	A0A2C9JUQ3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.528
A0A2C9JPC2	A0A2C9KKK8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.866
A0A2C9JTF7	A0A2C9JGU0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.661
A0A2C9JTF7	A0A2C9JUQ3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.528
A0A2C9JTF7	A0A2C9KKK8	Uncharacterized protein.	Uncharacterized protein.	0.645