38 items (Albugo candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN9_102360	CMP/dCMP-type deaminase domain-containing protein. (151 aa)
	BN9_130150	PNP_UDP_1 domain-containing protein. (256 aa)
	BN9_003440	Uncharacterized protein. (1506 aa)
	BN9_019290	Rab-GAP TBC domain-containing protein. (1048 aa)
	BN9_021440	Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (445 aa)
	BN9_038410	PABS domain-containing protein. (323 aa)
	BN9_043920	CMP/dCMP-type deaminase domain-containing protein. (319 aa)
	BN9_048050	Uncharacterized protein. (3970 aa)
	BN9_048100	Uncharacterized protein. (3956 aa)
	BN9_048070	Uncharacterized protein. (3971 aa)
	BN9_048120	Uncharacterized protein. (3975 aa)
	BN9_048080	Uncharacterized protein. (3957 aa)
	BN9_048090	Uncharacterized protein. (3962 aa)
	BN9_048060	Uncharacterized protein. (3961 aa)
	BN9_048110	Uncharacterized protein. (3976 aa)
	BN9_075380	PNP_UDP_1 domain-containing protein. (354 aa)
	BN9_086330	HD_domain domain-containing protein. (151 aa)
	BN9_091150	GRIP domain-containing protein. (483 aa)
	BN9_091200	GRIP domain-containing protein. (480 aa)
	BN9_091120	Uncharacterized protein. (462 aa)
	BN9_091220	Uncharacterized protein. (460 aa)
	BN9_091270	GRIP domain-containing protein. (461 aa)
	BN9_091320	Uncharacterized protein. (438 aa)
	BN9_091130	GRIP domain-containing protein. (459 aa)
	BN9_091180	Uncharacterized protein. (462 aa)
	BN9_091230	GRIP domain-containing protein. (462 aa)
	BN9_091280	GRIP domain-containing protein. (479 aa)
	BN9_091330	Uncharacterized protein. (464 aa)
	BN9_091140	GRIP domain-containing protein. (460 aa)
	BN9_091190	GRIP domain-containing protein. (459 aa)
	BN9_091240	GRIP domain-containing protein. (480 aa)
	BN9_091290	GRIP domain-containing protein. (483 aa)
	BN9_091110	GRIP domain-containing protein. (464 aa)
	BN9_091160	GRIP domain-containing protein. (484 aa)
	BN9_091260	Uncharacterized protein. (459 aa)
	BN9_091310	Uncharacterized protein. (441 aa)
	BN9_106630	CMP/dCMP-type deaminase domain-containing protein. (191 aa)
	BN9_129500	Pribosyltran domain-containing protein. (141 aa)

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_003440	BN9_043920	A0A024FYH7	A0A024GA18	Uncharacterized protein.	CMP/dCMP-type deaminase domain-containing protein.	0.406
BN9_003440	BN9_129500	A0A024FYH7	A0A024GUR9	Uncharacterized protein.	Pribosyltran domain-containing protein.	0.589
BN9_019290	BN9_038410	A0A024G2Z5	A0A024G9Q2	Rab-GAP TBC domain-containing protein.	PABS domain-containing protein.	0.632
BN9_019290	BN9_043920	A0A024G2Z5	A0A024GA18	Rab-GAP TBC domain-containing protein.	CMP/dCMP-type deaminase domain-containing protein.	0.445
BN9_019290	BN9_048050	A0A024G2Z5	A0A024GAX9	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.445
BN9_019290	BN9_048060	A0A024G2Z5	A0A024GCG8	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.445
BN9_019290	BN9_048070	A0A024G2Z5	A0A024GB85	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.445
BN9_019290	BN9_048080	A0A024G2Z5	A0A024GBI8	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.445
BN9_019290	BN9_048090	A0A024G2Z5	A0A024GBW9	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.445
BN9_019290	BN9_048100	A0A024G2Z5	A0A024GAY4	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.445
BN9_019290	BN9_048110	A0A024G2Z5	A0A024GCH3	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.445
BN9_019290	BN9_048120	A0A024G2Z5	A0A024GB88	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.445
BN9_019290	BN9_075380	A0A024G2Z5	A0A024GIK9	Rab-GAP TBC domain-containing protein.	PNP_UDP_1 domain-containing protein.	0.433
BN9_019290	BN9_091110	A0A024G2Z5	A0A024GNY4	Rab-GAP TBC domain-containing protein.	GRIP domain-containing protein.	0.414
BN9_019290	BN9_091120	A0A024G2Z5	A0A024GMR4	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.414
BN9_019290	BN9_091130	A0A024G2Z5	A0A024GMX3	Rab-GAP TBC domain-containing protein.	GRIP domain-containing protein.	0.414
BN9_019290	BN9_091140	A0A024G2Z5	A0A024GNG2	Rab-GAP TBC domain-containing protein.	GRIP domain-containing protein.	0.414
BN9_019290	BN9_091150	A0A024G2Z5	A0A024GMF2	Rab-GAP TBC domain-containing protein.	GRIP domain-containing protein.	0.414
BN9_019290	BN9_091160	A0A024G2Z5	A0A024GNY9	Rab-GAP TBC domain-containing protein.	GRIP domain-containing protein.	0.414
BN9_019290	BN9_091180	A0A024G2Z5	A0A024GMX8	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.414