(23 nodes) Mixed, incl. RZZ complex, subunit Zw10, and Dsl1/NZR complex network (Albugo candida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN9_050940	Uncharacterized protein. (978 aa)
	BN9_107480	Uncharacterized protein. (1797 aa)
	BN9_003120	t-SNARE coiled-coil homology domain-containing protein. (340 aa)
	BN9_025530	Uncharacterized protein. (812 aa)
	BN9_025580	Uncharacterized protein. (735 aa)
	BN9_025550	Uncharacterized protein. (795 aa)
	BN9_025560	Uncharacterized protein. (794 aa)
	BN9_025570	Uncharacterized protein. (734 aa)
	BN9_025540	Uncharacterized protein. (811 aa)
	BN9_035880	Uncharacterized protein. (509 aa)
	BN9_060370	Uncharacterized protein. (928 aa)
	BN9_066690	Uncharacterized protein. (685 aa)
	BN9_067990	Uncharacterized protein. (475 aa)
	BN9_086880	Uncharacterized protein. (301 aa)
	BN9_087810	Uncharacterized protein. (685 aa)
	BN9_092850	Uncharacterized protein. (856 aa)
	BN9_094050	Uncharacterized protein. (938 aa)
	BN9_094040	Uncharacterized protein. (937 aa)
	BN9_094060	Uncharacterized protein. (863 aa)
	BN9_110600	Uncharacterized protein. (875 aa)
	BN9_114110	Uncharacterized protein. (964 aa)
	BN9_114120	Uncharacterized protein. (922 aa)
	BN9_122280	Uncharacterized protein. (1129 aa)

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_003120	BN9_025530	A0A024FY70	A0A024G4I7	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.933
BN9_003120	BN9_025540	A0A024FY70	A0A024G629	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.933
BN9_003120	BN9_025550	A0A024FY70	A0A024G4T6	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.933
BN9_003120	BN9_025560	A0A024FY70	A0A024G514	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.933
BN9_003120	BN9_025570	A0A024FY70	A0A024G5D7	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.933
BN9_003120	BN9_025580	A0A024FY70	A0A024G4J4	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.933
BN9_003120	BN9_035880	A0A024FY70	A0A024G801	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.888
BN9_003120	BN9_050940	A0A024FY70	A0A024FTQ0	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.888
BN9_003120	BN9_060370	A0A024FY70	A0A024GEP3	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.888
BN9_003120	BN9_066690	A0A024FY70	A0A024GGC2	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.888
BN9_003120	BN9_067990	A0A024FY70	A0A024GGN1	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.888
BN9_003120	BN9_086880	A0A024FY70	A0A024GLR6	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.996
BN9_003120	BN9_087810	A0A024FY70	A0A024GN36	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.888
BN9_003120	BN9_092850	A0A024FY70	A0A024GN57	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.888
BN9_003120	BN9_094040	A0A024FY70	A0A024GP73	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.967
BN9_003120	BN9_094050	A0A024FY70	A0A024GN69	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.967
BN9_003120	BN9_094060	A0A024FY70	A0A024GPQ4	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.967
BN9_003120	BN9_107480	A0A024FY70	A0A024FTW9	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.987
BN9_003120	BN9_110600	A0A024FY70	A0A024GRZ3	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.888
BN9_003120	BN9_114110	A0A024FY70	A0A024GTB1	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.888