(58 nodes) Mixed, incl. Nucleotide-sugar transmembrane transport, and Copper ion transport network (Albugo candida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN9_074960	Uncharacterized protein. (206 aa)
	BN9_102010	Uncharacterized protein. (384 aa)
	BN9_003450	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (583 aa)
	BN9_003650	TPT domain-containing protein. (409 aa)
	BN9_003460	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (542 aa)
	BN9_000980	Uncharacterized protein. (456 aa)
	BN9_009040	Uncharacterized protein. (667 aa)
	BN9_016700	MFS domain-containing protein. (540 aa)
	BN9_016850	EamA domain-containing protein. (338 aa)
	BN9_019190	Uncharacterized protein. (270 aa)
	BN9_020120	Uncharacterized protein. (2706 aa)
	BN9_026480	Uncharacterized protein. (331 aa)
	BN9_027380	Uncharacterized protein. (372 aa)
	BN9_025910	Uncharacterized protein. (415 aa)
	BN9_025920	Rhomboid domain-containing protein. (266 aa)
	BN9_026760	Uncharacterized protein. (333 aa)
	BN9_027220	Uncharacterized protein. (334 aa)
	BN9_029660	Cation_ATPase_N domain-containing protein. (759 aa)
	BN9_027370	Uncharacterized protein. (337 aa)
	BN9_031160	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (3221 aa)
	BN9_030470	HMA domain-containing protein. (376 aa)
	BN9_032590	Uncharacterized protein. (310 aa)
	BN9_035470	MFS domain-containing protein. (503 aa)
	BN9_034880	MFS domain-containing protein. (468 aa)
	BN9_034090	Uncharacterized protein. (442 aa)
	BN9_038390	Uncharacterized protein. (596 aa)
	BN9_043080	Uncharacterized protein. (301 aa)
	BN9_058450	Uncharacterized protein. (203 aa)
	BN9_060590	AB hydrolase-1 domain-containing protein. (629 aa)
	BN9_060840	Uncharacterized protein. (376 aa)
	BN9_058690	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (640 aa)
	BN9_066700	Hydrolase_4 domain-containing protein. (414 aa)
	BN9_065690	Methyltransf_11 domain-containing protein. (207 aa)
	BN9_071720	Uncharacterized protein. (290 aa)
	BN9_071740	HMA domain-containing protein. (435 aa)
	BN9_071450	TPT domain-containing protein. (315 aa)
	BN9_072840	UmuC domain-containing protein. (962 aa)
	BN9_071460	TPT domain-containing protein. (302 aa)
	BN9_074300	Uncharacterized protein. (85 aa)
	BN9_071730	Uncharacterized protein. (296 aa)
	BN9_072830	UmuC domain-containing protein. (980 aa)
	BN9_082330	Uncharacterized protein. (394 aa)
	BN9_080100	Uncharacterized protein. (154 aa)
	BN9_086370	FYVE-type domain-containing protein. (631 aa)
	BN9_087880	Uncharacterized protein. (439 aa)
	BN9_092110	MFS domain-containing protein. (473 aa)
	BN9_092160	MFS domain-containing protein. (449 aa)
	BN9_087550	MFS domain-containing protein. (452 aa)
	BN9_092150	MFS domain-containing protein. (469 aa)
	BN9_109650	Uncharacterized protein. (208 aa)
	BN9_109670	Uncharacterized protein. (188 aa)
	BN9_109680	acidPPc domain-containing protein. (204 aa)
	BN9_112710	Uncharacterized protein. (318 aa)
	BN9_107080	Methyltransf_25 domain-containing protein. (458 aa)
	BN9_109690	acidPPc domain-containing protein. (176 aa)
	BN9_107380	Uncharacterized protein. (348 aa)
	BN9_109660	Uncharacterized protein. (202 aa)
	BN9_124710	Methyltranfer_dom domain-containing protein. (710 aa)

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_009040	BN9_020120	A0A024G1C2	A0A024G2Z4	Uncharacterized protein.	Uncharacterized protein.	0.607
BN9_009040	BN9_102010	A0A024G1C2	A0A024FU73	Uncharacterized protein.	Uncharacterized protein.	0.607
BN9_020120	BN9_009040	A0A024G2Z4	A0A024G1C2	Uncharacterized protein.	Uncharacterized protein.	0.607
BN9_025910	BN9_032590	A0A024G553	A0A024G7G8	Uncharacterized protein.	Uncharacterized protein.	0.586
BN9_025920	BN9_032590	A0A024G5H6	A0A024G7G8	Rhomboid domain-containing protein.	Uncharacterized protein.	0.586
BN9_032590	BN9_025910	A0A024G7G8	A0A024G553	Uncharacterized protein.	Uncharacterized protein.	0.586
BN9_032590	BN9_025920	A0A024G7G8	A0A024G5H6	Uncharacterized protein.	Rhomboid domain-containing protein.	0.586
BN9_058450	BN9_080100	A0A024GE15	A0A024GKK5	Uncharacterized protein.	Uncharacterized protein.	0.494
BN9_080100	BN9_058450	A0A024GKK5	A0A024GE15	Uncharacterized protein.	Uncharacterized protein.	0.494
BN9_102010	BN9_009040	A0A024FU73	A0A024G1C2	Uncharacterized protein.	Uncharacterized protein.	0.607