(41 nodes) Proteasome network (Albugo candida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN9_091550	Uncharacterized protein. (308 aa)
	BN9_007030	MPN domain-containing protein. (338 aa)
	BN9_007730	Uncharacterized protein. (714 aa)
	BN9_010260	PCI domain-containing protein. (383 aa)
	BN9_012830	VWFA domain-containing protein. (362 aa)
	BN9_014630	CSN8_PSD8_EIF3K domain-containing protein. (269 aa)
	KATNAL2	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. (551 aa)
	BN9_014200	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (280 aa)
	BN9_019720	Uncharacterized protein. (296 aa)
	BN9_019600	Uncharacterized protein. (879 aa)
	BN9_019610	Uncharacterized protein. (897 aa)
	BN9_019730	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (293 aa)
	BN9_026180	Proteasome subunit alpha type. (254 aa)
	BN9_025110	Proteasome subunit alpha type. (248 aa)
	BN9_033750	Proteasome subunit beta; Belongs to the peptidase T1B family. (231 aa)
	BN9_036240	Uncharacterized protein. (1148 aa)
	BN9_040450	Proteasome subunit alpha type. (232 aa)
	BN9_040440	Proteasome subunit alpha type. (244 aa)
	BN9_052780	AAA domain-containing protein; Belongs to the AAA ATPase family. (401 aa)
	BN9_052790	AAA domain-containing protein; Belongs to the AAA ATPase family. (405 aa)
	BN9_060220	PCI domain-containing protein. (445 aa)
	BN9_064030	Proteasome subunit alpha type. (250 aa)
	BN9_064690	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (235 aa)
	BN9_068590	PCI domain-containing protein. (397 aa)
	BN9_068580	PCI domain-containing protein. (414 aa)
	BN9_072850	RPN2_C domain-containing protein; Belongs to the proteasome subunit S1 family. (984 aa)
	BN9_072730	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (294 aa)
	BN9_077110	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (216 aa)
	BN9_081390	MPN domain-containing protein. (311 aa)
	BN9_080770	PI3K/PI4K domain-containing protein. (124 aa)
	BN9_085400	AAA domain-containing protein; Belongs to the AAA ATPase family. (442 aa)
	BN9_086320	PCI domain-containing protein. (512 aa)
	BN9_092460	Proteasome subunit alpha type. (242 aa)
	BN9_099440	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (254 aa)
	BN9_097210	PCI domain-containing protein. (435 aa)
	BN9_101070	Uncharacterized protein. (68 aa)
	BN9_101120	AAA domain-containing protein; Belongs to the AAA ATPase family. (396 aa)
	BN9_107240	Uncharacterized protein. (284 aa)
	BN9_107260	Uncharacterized protein. (247 aa)
	BN9_109110	AAA domain-containing protein; Belongs to the AAA ATPase family. (441 aa)
	BN9_111790	AAA domain-containing protein; Belongs to the AAA ATPase family. (404 aa)

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_007030	BN9_007730	A0A024FZC2	A0A024FZH3	MPN domain-containing protein.	Uncharacterized protein.	0.999
BN9_007030	BN9_010260	A0A024FZC2	A0A024G065	MPN domain-containing protein.	PCI domain-containing protein.	0.999
BN9_007030	BN9_012830	A0A024FZC2	A0A024G167	MPN domain-containing protein.	VWFA domain-containing protein.	0.998
BN9_007030	BN9_014200	A0A024FZC2	A0A024G242	MPN domain-containing protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.995
BN9_007030	BN9_014630	A0A024FZC2	A0A024G1M9	MPN domain-containing protein.	CSN8_PSD8_EIF3K domain-containing protein.	0.997
BN9_007030	BN9_019600	A0A024FZC2	A0A024G3D1	MPN domain-containing protein.	Uncharacterized protein.	0.993
BN9_007030	BN9_019610	A0A024FZC2	A0A024G3M2	MPN domain-containing protein.	Uncharacterized protein.	0.993
BN9_007030	BN9_019720	A0A024FZC2	A0A024G2V2	MPN domain-containing protein.	Uncharacterized protein.	0.989
BN9_007030	BN9_019730	A0A024FZC2	A0A024G4E8	MPN domain-containing protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.989
BN9_007030	BN9_025110	A0A024FZC2	A0A024G4X0	MPN domain-containing protein.	Proteasome subunit alpha type.	0.997
BN9_007030	BN9_026180	A0A024FZC2	A0A024G4R2	MPN domain-containing protein.	Proteasome subunit alpha type.	0.995
BN9_007030	BN9_033750	A0A024FZC2	A0A024G6T8	MPN domain-containing protein.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.997
BN9_007030	BN9_036240	A0A024FZC2	A0A024G8G9	MPN domain-containing protein.	Uncharacterized protein.	0.994
BN9_007030	BN9_040440	A0A024FZC2	A0A024G9N6	MPN domain-containing protein.	Proteasome subunit alpha type.	0.994
BN9_007030	BN9_040450	A0A024FZC2	A0A024G8R1	MPN domain-containing protein.	Proteasome subunit alpha type.	0.994
BN9_007030	BN9_052780	A0A024FZC2	A0A024GC96	MPN domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.994
BN9_007030	BN9_052790	A0A024FZC2	A0A024GDR8	MPN domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.994
BN9_007030	BN9_060220	A0A024FZC2	A0A024GEM8	MPN domain-containing protein.	PCI domain-containing protein.	0.999
BN9_007030	BN9_064030	A0A024FZC2	A0A024GFI1	MPN domain-containing protein.	Proteasome subunit alpha type.	0.997
BN9_007030	BN9_064690	A0A024FZC2	A0A024GFU8	MPN domain-containing protein.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.998