(126 nodes) Nucleotidyltransferase activity network (Albugo candida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN9_101180	Threonine dehydratase. (1440 aa)
	BN9_096800	Uncharacterized protein. (623 aa)
	BN9_093900	Uncharacterized protein. (906 aa)
	BN9_085930	DNA_pol_B_thumb domain-containing protein. (84 aa)
	BN9_083840	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1179 aa)
	BN9_086260	RPOLD domain-containing protein. (338 aa)
	Ev1906	Ev1906 protein. (203 aa)
	BN9_083850	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1170 aa)
	BN9_080250	MoCF_biosynth domain-containing protein. (278 aa)
	BN9_079700	NTP_transferase domain-containing protein. (449 aa)
	BN9_074830	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2466 aa)
	BN9_080260	MoCF_biosynth domain-containing protein. (259 aa)
	BN9_075150	Aminotran_5 domain-containing protein. (154 aa)
	BN9_072780	Uncharacterized protein. (656 aa)
	BN9_072660	Uncharacterized protein. (229 aa)
	BN9_072650	Uncharacterized protein. (214 aa)
	BN9_069490	POLAc domain-containing protein. (710 aa)
	BN9_069480	POLAc domain-containing protein. (834 aa)
	BN9_064920	Uncharacterized protein. (319 aa)
	BN9_068940	Uncharacterized protein. (796 aa)
	BN9_062330	DNA polymerase. (1560 aa)
	BN9_062280	DNA polymerase. (1532 aa)
	BN9_062230	DNA polymerase. (1729 aa)
	BN9_062310	DNA polymerase. (1542 aa)
	BN9_064930	Uncharacterized protein. (317 aa)
	BN9_062260	DNA polymerase. (1695 aa)
	BN9_062300	DNA polymerase. (1584 aa)
	BN9_062250	DNA polymerase. (1742 aa)
	BN9_058090	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1011 aa)
	BN9_062290	DNA polymerase. (1566 aa)
	BN9_062240	DNA polymerase. (1724 aa)
	BN9_062320	DNA polymerase. (1508 aa)
	BN9_062270	DNA polymerase. (1747 aa)
	BN9_061270	NTP_transf_2 domain-containing protein. (1327 aa)
	BN9_056690	Uncharacterized protein. (485 aa)
	BN9_060340	Uncharacterized protein. (2654 aa)
	BN9_058100	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (910 aa)
	BN9_056630	CTP_transf_like domain-containing protein. (293 aa)
	BN9_058080	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (924 aa)
	BN9_056700	Uncharacterized protein. (483 aa)
	BN9_049110	Uncharacterized protein. (911 aa)
	BN9_053430	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (474 aa)
	BN9_049140	Uncharacterized protein. (929 aa)
	BN9_050230	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (540 aa)
	BN9_049130	Uncharacterized protein. (1006 aa)
	BN9_049120	Uncharacterized protein. (1001 aa)
	BN9_043410	Uncharacterized protein. (293 aa)
	BN9_047320	Aminotran_5 domain-containing protein. (652 aa)
	BN9_047170	Aminotran_5 domain-containing protein. (619 aa)
	BN9_046970	Uncharacterized protein. (160 aa)
	BN9_045850	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1152 aa)
	BN9_038710	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (990 aa)
	BN9_043400	Uncharacterized protein. (315 aa)
	BN9_041600	Peptidyl-prolyl cis-trans isomerase. (176 aa)
	BN9_033560	Uncharacterized protein. (655 aa)
	BN9_033540	Uncharacterized protein. (666 aa)
	BN9_030300	C3H1-type domain-containing protein. (652 aa)
	BN9_030250	C3H1-type domain-containing protein. (671 aa)
	BN9_030200	NTP_transf_2 domain-containing protein. (461 aa)
	BN9_030150	C3H1-type domain-containing protein. (667 aa)
	BN9_030100	C3H1-type domain-containing protein. (668 aa)
	BN9_031820	Uncharacterized protein. (233 aa)
	BN9_033550	Uncharacterized protein. (682 aa)
	BN9_030280	C3H1-type domain-containing protein. (676 aa)
	BN9_030230	C3H1-type domain-containing protein. (650 aa)
	BN9_030180	C3H1-type domain-containing protein. (630 aa)
	BN9_030130	C3H1-type domain-containing protein. (661 aa)
	BN9_026640	Uncharacterized protein. (1045 aa)
	BN9_031840	Uncharacterized protein. (134 aa)
	BN9_030270	C3H1-type domain-containing protein. (680 aa)
	BN9_030220	C3H1-type domain-containing protein. (648 aa)
	BN9_030170	NTP_transf_2 domain-containing protein. (480 aa)
	BN9_030120	C3H1-type domain-containing protein. (657 aa)
	BN9_026240	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (303 aa)
	BN9_031390	Uncharacterized protein. (72 aa)
	BN9_030260	NTP_transf_2 domain-containing protein. (457 aa)
	BN9_030210	C3H1-type domain-containing protein. (634 aa)
	BN9_030160	C3H1-type domain-containing protein. (687 aa)
	BN9_027970	Uncharacterized protein. (659 aa)
	BN9_030110	NTP_transf_2 domain-containing protein. (476 aa)
	BN9_074990	Uncharacterized protein. (210 aa)
	BN9_080510	Uncharacterized protein. (635 aa)
	BN9_080490	Uncharacterized protein. (1227 aa)
	BN9_094470	Uncharacterized protein. (106 aa)
	BN9_122660	Threonylcarbamoyl-AMP synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (369 aa)
	BN9_123870	RNA_pol_L_2 domain-containing protein. (135 aa)
	BN9_126700	Threonylcarbamoyl-AMP synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (369 aa)
	BN9_003440	Uncharacterized protein. (1506 aa)
	BN9_002650	DNA polymerase. (1559 aa)
	BN9_003500	Aminotran_5 domain-containing protein. (653 aa)
	BN9_002660	DNA polymerase. (1554 aa)
	BN9_004850	CCHC-type domain-containing protein. (492 aa)
	BN9_005250	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (523 aa)
	BN9_004860	CCHC-type domain-containing protein. (471 aa)
	BN9_003680	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1546 aa)
	BN9_006840	Uncharacterized protein. (383 aa)
	BN9_009840	Uncharacterized protein. (154 aa)
	BN9_011590	Phosphatidate cytidylyltransferase; Belongs to the CDS family. (534 aa)
	BN9_011000	Uncharacterized protein. (814 aa)
	BN9_015570	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1798 aa)
	BN9_017020	HHH_8 domain-containing protein. (205 aa)
	BN9_020670	Uncharacterized protein. (367 aa)
	BN9_020040	RPOLD domain-containing protein. (319 aa)
	BN9_018760	Uncharacterized protein. (1324 aa)
	BN9_021970	Uncharacterized protein. (832 aa)
	BN9_023830	DNA polymerase. (1086 aa)
	BN9_026250	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (290 aa)
	BN9_027980	Uncharacterized protein. (674 aa)
	BN9_029040	S1 motif domain-containing protein. (771 aa)
	BN9_023840	DNA polymerase. (1073 aa)
	BN9_027960	Uncharacterized protein. (677 aa)
	BN9_030140	C3H1-type domain-containing protein. (654 aa)
	BN9_030190	C3H1-type domain-containing protein. (672 aa)
	BN9_030240	C3H1-type domain-containing protein. (643 aa)
	BN9_026720	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (784 aa)
	BN9_030290	C3H1-type domain-containing protein. (691 aa)
	BN9_112270	Uncharacterized protein. (331 aa)
	BN9_112260	CTP_transf_like domain-containing protein. (325 aa)
	BN9_104630	PAP-associated domain-containing protein. (804 aa)
	BN9_101790	Uncharacterized protein. (491 aa)
	BN9_100370	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1202 aa)
	BN9_101460	UmuC domain-containing protein. (605 aa)
	BN9_103360	Uncharacterized protein. (306 aa)
	BN9_103350	Uncharacterized protein. (223 aa)
	BN9_104620	PAP-associated domain-containing protein. (847 aa)
	BN9_093890	Uncharacterized protein. (900 aa)

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_002650	BN9_015570	A0A024FYK0	A0A024G1Q2	DNA polymerase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.504
BN9_002650	BN9_023830	A0A024FYK0	A0A024G411	DNA polymerase.	DNA polymerase.	0.893
BN9_002650	BN9_023840	A0A024FYK0	A0A024G5K6	DNA polymerase.	DNA polymerase.	0.893
BN9_002650	BN9_038710	A0A024FYK0	A0A024G9S7	DNA polymerase.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.836
BN9_002650	BN9_053430	A0A024FYK0	A0A024GCF3	DNA polymerase.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.993
BN9_002650	BN9_074830	A0A024FYK0	A0A024GJP7	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.985
BN9_002650	BN9_101460	A0A024FYK0	A0A024GQZ4	DNA polymerase.	UmuC domain-containing protein.	0.836
BN9_002660	BN9_015570	A0A024FYW7	A0A024G1Q2	DNA polymerase.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.503
BN9_002660	BN9_023830	A0A024FYW7	A0A024G411	DNA polymerase.	DNA polymerase.	0.893
BN9_002660	BN9_023840	A0A024FYW7	A0A024G5K6	DNA polymerase.	DNA polymerase.	0.893
BN9_002660	BN9_038710	A0A024FYW7	A0A024G9S7	DNA polymerase.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.836
BN9_002660	BN9_053430	A0A024FYW7	A0A024GCF3	DNA polymerase.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.993
BN9_002660	BN9_074830	A0A024FYW7	A0A024GJP7	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.985
BN9_002660	BN9_101460	A0A024FYW7	A0A024GQZ4	DNA polymerase.	UmuC domain-containing protein.	0.836
BN9_003440	BN9_041600	A0A024FYH7	A0A024G959	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase.	0.621
BN9_003500	BN9_041600	A0A024FYS4	A0A024G959	Aminotran_5 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase.	0.621
BN9_003680	BN9_015570	A0A024FZU0	A0A024G1Q2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.970
BN9_003680	BN9_020040	A0A024FZU0	A0A024G378	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.993
BN9_003680	BN9_026240	A0A024FZU0	A0A024G6A6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.987
BN9_003680	BN9_026250	A0A024FZU0	A0A024G506	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.987