(14 nodes) Cellular response to topologically incorrect protein network (Albugo candida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN9_134450	Uncharacterized protein. (372 aa)
	BN9_020030	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (420 aa)
	BN9_033670	Uncharacterized protein. (330 aa)
	BN9_033660	Uncharacterized protein. (313 aa)
	BN9_043900	Uncharacterized protein. (1658 aa)
	BN9_043890	Uncharacterized protein. (1673 aa)
	BN9_046520	OTU domain-containing protein. (294 aa)
	BN9_049710	PRKCSH domain-containing protein. (422 aa)
	BN9_060690	Uncharacterized protein. (136 aa)
	BN9_070190	Uncharacterized protein. (187 aa)
	BN9_081430	Ubiquitin-like domain-containing protein. (420 aa)
	BN9_088580	Nudix hydrolase domain-containing protein. (167 aa)
	BN9_112860	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (238 aa)
	BN9_118290	Uncharacterized protein; Belongs to the heat shock protein 70 family. (665 aa)

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_020030	BN9_033660	A0A024G4I0	A0A024G8C7	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.839
BN9_020030	BN9_033670	A0A024G4I0	A0A024G754	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.839
BN9_020030	BN9_049710	A0A024G4I0	A0A024GCX9	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	PRKCSH domain-containing protein.	0.979
BN9_020030	BN9_060690	A0A024G4I0	A0A024GF75	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.792
BN9_020030	BN9_070190	A0A024G4I0	A0A024GHB6	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.792
BN9_020030	BN9_088580	A0A024G4I0	A0A024GMT9	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Nudix hydrolase domain-containing protein.	0.805
BN9_020030	BN9_118290	A0A024G4I0	A0A024GV30	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.792
BN9_020030	BN9_134450	A0A024G4I0	A0A024FYL8	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.792
BN9_033660	BN9_020030	A0A024G8C7	A0A024G4I0	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.839
BN9_033660	BN9_046520	A0A024G8C7	A0A024GAT2	Uncharacterized protein.	OTU domain-containing protein.	0.954
BN9_033660	BN9_112860	A0A024G8C7	A0A024GSD7	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.839
BN9_033670	BN9_020030	A0A024G754	A0A024G4I0	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.839
BN9_033670	BN9_046520	A0A024G754	A0A024GAT2	Uncharacterized protein.	OTU domain-containing protein.	0.954
BN9_033670	BN9_112860	A0A024G754	A0A024GSD7	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.839
BN9_043890	BN9_049710	A0A024GAM9	A0A024GCX9	Uncharacterized protein.	PRKCSH domain-containing protein.	0.468
BN9_043900	BN9_049710	A0A024G9P9	A0A024GCX9	Uncharacterized protein.	PRKCSH domain-containing protein.	0.468
BN9_046520	BN9_033660	A0A024GAT2	A0A024G8C7	OTU domain-containing protein.	Uncharacterized protein.	0.954
BN9_046520	BN9_033670	A0A024GAT2	A0A024G754	OTU domain-containing protein.	Uncharacterized protein.	0.954
BN9_049710	BN9_020030	A0A024GCX9	A0A024G4I0	PRKCSH domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.979
BN9_049710	BN9_043890	A0A024GCX9	A0A024GAM9	PRKCSH domain-containing protein.	Uncharacterized protein.	0.468